YRC Public Data Repository - Protein Structure Prediction

Protein:	FYV4
Organism:	Saccharomyces cerevisiae
Length:	130 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FYV4.

Description	E-value	Query Range	Subject Range
FYV4_SCHPO - Protein fyv4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fyv4 PE=3 SV=1 SPBC4B4.11 - conserved fungal protein	163.0	[0..12]	[118..7]
FYV4_CANGA - Protein FYV4, mitochondrial OS=Candida glabrata GN=FYV4 PE=3 SV=1 FYV4_CANGA - Protein FYV4, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /...	128.0	[0..26]	[129..20]
FYV4_ASHGO - Protein FYV4, mitochondrial OS=Ashbya gossypii GN=FYV4 PE=3 SV=1 FYV4_ASHGO - Protein FYV4, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-...	121.0	[0..28]	[130..18]
gi\|16944465, gi\|... - gi\|32404684\|ref\|XP_322955.1\| hypothetical protein [Neurospora crassa], gi\|28922253\|gb\|EAA31497.1\| hy... gi\|85099207 - gi\|85099207\|ref\|XP_960733.1\| hypothetical protein [Neurospora crassa OR74A]	108.0	[0..31]	[98..122]
FYV4_KLULA - Protein FYV4, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC ... FYV4_KLULA - Protein FYV4, mitochondrial OS=Kluyveromyces lactis GN=FYV4 PE=3 SV=1	101.0	[0..33]	[129..26]
gi\|116198107, gi... - gi\|88178488\|gb\|EAQ85956.1\| hypothetical protein CHGG_07209 [Chaetomium globosum CBS 148.51], gi\|1161...	95.0	[0..31]	[98..46]
gi\|70987444, gi\|... - gi\|70987444\|ref\|XP_749135.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668467... gi\|159123093 - gi\|159123093\|gb\|EDP48213.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	87.0	[0..2]	[97..11]
gi\|46126073, gi\|... - gi\|46126073\|ref\|XP_387590.1\| hypothetical protein FG07414.1 [Gibberella zeae PH-1], gi\|42553290\|gb\|E...	87.0	[0..1]	[97..1]
gi\|90299091, gi\|... - gi\|90299091\|gb\|EAS28722.1\| hypothetical protein CIMG_07468 [Coccidioides immitis RS], gi\|119176899\|r...	83.0	[0..31]	[97..39]
gi\|83770105 - gi\|83770105\|dbj\|BAE60240.1\| unnamed protein product [Aspergillus oryzae] gi\|169775549 - gi\|169775549\|ref\|XP_001822242.1\| hypothetical protein [Aspergillus oryzae RIB40]	81.0	[0..26]	[97..27]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPSRISHKF PLFLRSSLAA PKAAYRFSST IPKPSDQVPD VDAFLNKIGR NCNELKDTFE  60
   61 NNWNNLFQWD SKILKEKGVN IQQRKYILKQ VHNYRNNRPI HEIKLGKKSF FGGERKRKAF 120
  121 TAKWKAENKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	2eaoA
Description:	No description for 2eaoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits