| Protein: | CIC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 376 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIC1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-86 | [1..376] | [1..376] |
|
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3.0E-54 | [57..299] | [2..232] |
|
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3.0E-54 | [62..291] | [6..225] |
|
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5.0E-54 | [64..291] | [9..225] |
|
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6.0E-54 | [64..291] | [8..224] |
|
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5.0E-53 | [58..295] | [3..228] |
|
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6.0E-53 | [58..295] | [3..228] |
|
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9.0E-52 | [56..294] | [2..227] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 MAKKSNSKKS TPVSTPSKEK KKVIEKKSST AIPRERVIKA VNELIKFTSK PQDENNEEGN 60
61 NGKKNLLEDD EEELKKDLQL IVVNNKSFTG TSKSFKLKLL NVKHSFYKPW KEASATAVKD 120
121 FKVLLILKDS
|
|
Region B: Residues: [219-311] |
1 11 21 31 41 51
| | | | | |
1 LTTLTNNIKK VYMNQLPVKL PRGTTLNVHL GNLEWLRPEE FVDNVELISE QLIKAYQIRS 60
61 IFIKTNRSPV LPLYYNQDVL DELEAKKDKI EET
|
| Detection Method: |  |
| Confidence: | 54.69897 |
| Match: | 1eg0N_ |
| Description: | 70S ribosome functional complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [131-218] |
1 11 21 31 41 51
| | | | | |
1 DIKKVSEDDL FDQLDSEGIK VDEIICGKDL KTVYKAYEAR NAFISQFSLI LADDSIVTSL 60
61 PKLMGGKAYN KVETTPISIR THANKEFS
|
| Detection Method: | |
| Confidence: | 54.69897 |
| Match: | 1eg0N_ |
| Description: | 70S ribosome functional complex |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [312-376] |
1 11 21 31 41 51
| | | | | |
1 HEDDMVTIDG VQVHLSTFNK GLMEIANPSE LGSIFSKQIN NAKKRSSSEL EKESSESEAV 60
61 KKAKS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.454 | a.4.1 | Homeodomain-like |
| View | Download | 0.680 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.458 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.461 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.484 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.451 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.444 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.443 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.439 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.435 | a.21.1 | HMG-box |
| View | Download | 0.419 | a.112.1 | Description not found. |
| View | Download | 0.417 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.406 | a.4.1 | Homeodomain-like |
| View | Download | 0.398 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.391 | a.101.1 | Uteroglobin-like |
| View | Download | 0.386 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.374 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.374 | a.4.1 | Homeodomain-like |
| View | Download | 0.365 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.336 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.321 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.317 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.316 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.311 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.300 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.298 | d.15.1 | Ubiquitin-like |
| View | Download | 0.295 | a.5.2 | UBA-like |
| View | Download | 0.295 | a.4.3 | ARID-like |
| View | Download | 0.290 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.287 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.277 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.276 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.272 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.271 | a.65.1 | Annexin |
| View | Download | 0.264 | d.217.1 | SAND domain-like |
| View | Download | 0.264 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.260 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.242 | a.39.1 | EF-hand |
| View | Download | 0.241 | a.29.2 | Bromodomain |
| View | Download | 0.236 | a.64.1 | Saposin |
| View | Download | 0.233 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.226 | a.46.1 | Methionine synthase domain |
| View | Download | 0.219 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.212 | a.64.1 | Saposin |
| View | Download | 0.211 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.210 | a.3.1 | Cytochrome c |
| View | Download | 0.205 | a.20.1 | PGBD-like |
| View | Download | 0.203 | a.7.7 | BAG domain |
| View | Download | 0.201 | a.28.1 | ACP-like |
