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View Structure Prediction Details

Protein: BCD1
Organism: Saccharomyces cerevisiae
Length: 366 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCD1.

Description E-value Query
Range
Subject
Range
FBpp0302582, FBp... - This gene is referred to in FlyBase by the symbol Dmel\CG1463 (CG1463, FBgn0030406). It is a protein...
gi|220960464, gi... - gi|220960464|gb|ACL92768.1| CG1463-PA [synthetic construct], gi|220949106|gb|ACL87096.1| CG1463-PA [...
303.0 [0..4] [300..16]
gi|167773811 - gi|167773811|gb|ABZ92340.1| chromosome 1 open reading frame 181 [synthetic construct]
ZNHIT6 - zinc finger, HIT type 6
300.0 [0..5] [302..220]
gi|114557502 - gi|114557502|ref|XP_001142619.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
298.0 [0..5] [302..220]
gi|109009546 - gi|109009546|ref|XP_001109136.1| PREDICTED: similar to CG1463-PA [Macaca mulatta]
295.0 [0..5] [302..220]
CA181_PONPY - HIT-type zinc finger-containing protein C1orf181 homolog - Pongo pygmaeus (Orangutan)
BCD1_PONAB - Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1
292.0 [0..5] [302..215]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLCGVCGI KEFKYKCPRC LVQTCSLECS KKHKTRDNCS GQTHDPKEYI SSEALKQADD  60
   61 DKHERNAYVQ RD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNYLTQLKRM VHVQKMDARM KNKRVLGPVG GHNSNFKKRR YDIDEDDRDS TECQRIIRRG  60
   61 VNCLMLPKGM QRSSQNRSKW DKTMDLFVWS VEWILCPMQE KGEKKELFKH VSHRIKETDF 120
  121 LVQGMGKNVF QKCCEFYRLA GTSSCIEGED GSETKEERTQ ILQKSGLKFY TKTFPYNTTH 180
  181 IMDSKKLVEL AIHEKCIGEL LKNTTVIEFP TIFVAMTEAD LPEGYEVLHQ EPRPLEHTST 240
  241 LNKFIDNARE EEDAEEDSQP TEEPVQKETQ DASDSDSDSD DDYNPGLSMD FLTA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle