YRC Public Data Repository - Protein Structure Prediction

Protein:	VMA10
Organism:	Saccharomyces cerevisiae
Length:	114 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA10.

Description	E-value	Query Range	Subject Range
gi\|109498722 - gi\|109498722\|ref\|XP_001065881.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit G, isofor...	139.0	[0..2]	[112..107]
VATG1_BOVIN - V-type proton ATPase subunit G 1 OS=Bos taurus GN=ATP6V1G1 PE=1 SV=3	131.0	[0..2]	[112..3]
gi\|109149627, gi... - gi\|109149627\|ref\|XP_001084453.1\| PREDICTED: similar to vacuolar H+ ATPase G1 [Macaca mulatta], gi\|10... CCDS6807.1_1 - null	130.0	[0..2]	[112..3]
VATG1_MOUSE - V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=1 SV=3	130.0	[0..2]	[112..3]
ATP6V1G1 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 gi\|55632251 - gi\|55632251\|ref\|XP_528400.1\| PREDICTED: similar to vacuolar H(+)-ATPase subunit isoform 2 [Pan trogl...	129.0	[0..2]	[112..3]
gi\|114626332 - gi\|114626332\|ref\|XP_001155506.1\| PREDICTED: similar to vacuolar H(+)-ATPase subunit isoform 1 [Pan t...	127.0	[0..2]	[112..3]
gi\|123232990, gi... - gi\|41152466\|ref\|NP_956228.1\| vacuolar H+ ATPase G1 [Danio rerio], gi\|37590382\|gb\|AAH59611.1\| ATPase,... gi\|166158146, gi... - gi\|166158146\|ref\|NP_001107476.1\| hypothetical protein LOC100135327 [Xenopus (Silurana) tropicalis], ...	125.0	[0..2]	[112..3]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKNGIATL LQAEKEAHEI VSKARKYRQD KLKQAKTDAA KEIDSYKIQK DKELKEFEQK  60
   61 NAGGVGELEK KAEAGVQGEL AEIKKIAEKK KDDVVKILIE TVIKPSAEVH INAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.443697
Match:	PF03179.6
Description:	No description for PF03179.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.772	N/A	N/A	a.7.5	Tubulin chaperone cofactor A
View	Download	0.645	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.645	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.563	N/A	N/A	a.7.6	Ribosomal protein S20

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits