YRC Public Data Repository - Protein Structure Prediction

Protein:	YHR032W
Organism:	Saccharomyces cerevisiae
Length:	581 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR032W.

Description	E-value	Query Range	Subject Range
gi\|382954 - gi\|382954\|prf\|\|1901324A ethionine resistance gene	533.0	[0..1]	[579..1]
gi\|49527044 - gi\|49527044\|emb\|CAG60680.1\| unnamed protein product [Candida glabrata] gi\|49527044, gi\|... - gi\|50290601\|ref\|XP_447733.1\| unnamed protein product [Candida glabrata], gi\|49527044\|emb\|CAG60680.1\|...	347.0	[0..1]	[579..1]
gi\|113548993, gi... - gi\|115453843\|ref\|NP_001050522.1\| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi\|113548993...	346.0	[0..142]	[580..623]
gi\|49645189 - gi\|49645189\|emb\|CAG98761.1\| KLLA0F21802p [Kluyveromyces lactis] gi\|50312043, gi\|... - gi\|50312043\|ref\|XP_456053.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645189\|emb\|CAG9876...	342.0	[0..1]	[579..1]
gi\|45190837, gi\|... - gi\|45190837\|ref\|NP_985091.1\| AER234Wp [Ashbya gossypii ATCC 10895], gi\|44983879\|gb\|AAS52915.1\| AER23... gi\|44983879 - gi\|44983879\|gb\|AAS52915.1\| AER234Wp [Ashbya gossypii ATCC 10895]	323.0	[0..1]	[579..1]
gi\|16797803 - gi\|16797803\|dbj\|BAB71817.1\| hypothetical membrane protein-1 [Marchantia polymorpha]	311.0	[0..126]	[579..4]
gi\|30047775 - gi\|30047775\|gb\|AAH50592.1\| SLC47A1 protein [Homo sapiens]	306.0	[0..135]	[579..22]
SPAC323.07c - MatE family transporter YL47_SCHPO - Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3...	304.0	[0..101]	[580..27]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQFSHTTN DRRSSIIYST SVGKAGLFTP ADYIPQESEE NLIEGEEQEG SEEEPSYTGN  60
   61 DDETEREGEY HSLLDANNSR TLQQEAWQQG YDSHDRKRLL DEERDLLIDN KLLSQHGNGG 120
  121 GDIESHGHGQ AIGPDEEERP AEIA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [145-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTWESAIESG QKISTTFKRE TQVITMNALP LIFTFILQNS LSLASIFSVS HLGTKELGGV  60
   61 TLGSMTANIT GLAAIQGLCT CLDTLCAQAY GAKNYHLVGV LVQRCAVITI LAFLPMMYVW 120
  121 FVWSEKILAL MIPERELCAL AANYLRVTAF GVPGFILFEC GKRFLQCQGI FHASTI

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	7.39
Match:
Description:	No description for 1b3uA was found.

Predicted Domain #3

Region A:
Residues: [321-581]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLFVCAPLNA LMNYLLVWND KIGIGYLGAP LSVVINYWLM TLGLLIYAMT TKHKERPLKC  60
   61 WNGIIPKEQA FKNWRKMINL AIPGVVMVEA EFLGFEVLTI FASHLGTDAL GAQSIVATIA 120
  121 SLAYQVPFSI SVSTSTRVAN FIGASLYDSC MITCRVSLLL SFVCSSMNMF VICRYKEQIA 180
  181 SLFSTESAVV KMVVDTLPLL AFMQLFDAFN ASTAGCLRGQ GRQKNRWVHQ PSRILLPRCA 240
  241 HGICVSIPVS SGCRRLMVGY N

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	7.39
Match:
Description:	No description for 1b3uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits