YRC Public Data Repository - Protein Structure Prediction

Protein:	YHI9
Organism:	Saccharomyces cerevisiae
Length:	294 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHI9.

Description	E-value	Query Range	Subject Range
YHI9_YEAST - Uncharacterized isomerase YHI9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHI9 PE=1... YHI9 - Protein of unknown function; null mutant is defective in unfolded protein response; possibly involve...	1.0E-71	[1..294]	[1..294]
YY46_CLOAB, Y344... - (P58293) Hypothetical protein CAC3446, Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutyli... Y3446_CLOAB - Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 14...	2.0E-61	[1..294]	[1..301]
PBLD1_MOUSE - Phenazine biosynthesis-like domain-containing protein 1 OS=Mus musculus GN=Pbld1 PE=1 SV=2	5.0E-61	[3..292]	[1..286]
PBLD - phenazine biosynthesis-like protein domain containing	2.0E-59	[3..292]	[1..286]
Y283_BACHD - Uncharacterized isomerase BH0283 OS=Bacillus halodurans GN=BH0283 PE=3 SV=1 Y283_BACHD - Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344...	2.0E-59	[3..294]	[2..265]
gi\|15384868 - gi\|15384868\|emb\|CAC59746.1\| putative antibiotic biosynthesis protein [Erwinia chrysanthemi]	7.0E-59	[1..294]	[1..293]
gi\|7271069 - gi\|7271069\|emb\|CAB77656.1\| hypothetical protein [Candida albicans]	8.0E-59	[4..294]	[1..302]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLMVPFKQV DVFTEKPFMG NPVAVINFLE IDENEVSQEE LQAIANWTNL SETTFLFKPS  60
   61 DKKYDYKLRI FTPRSELPFA GHPTIGSCKA FLEFTKNTTA TSLVQECKIG AVPITINEGL 120
  121 ISF

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [281-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGHATTVIDG KIKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.39794
Match:	1bwzA_
Description:	Diaminopimelate epimerase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [124-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAPMADYESI SSEMIADYEK AIGLKFIKPP ALLHTGPEWI VALVEDAETC FNANPNFAML  60
   61 AHQTKQNDHV GIILAGPKKE AAIKNSYEMR AFAPVINVYE DPVCGSGSVA LARYLQEVYK 120
  121 FEKTTDITIS EGGRLKRNGL MLASIKKEAD NSTSYYI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.39794
Match:	1bwzA_
Description:	Diaminopimelate epimerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits