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View Structure Prediction Details

Protein: PPA1
Organism: Saccharomyces cerevisiae
Length: 213 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPA1.

Description E-value Query
Range
Subject
Range
gi|190405811 - gi|190405811|gb|EDV09078.1| proteolipid [Saccharomyces cerevisiae RM11-1a]
PPA1 - Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole; one of three pr...
VATO_YEAST - V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA16 P...
gi|151943970 - gi|151943970|gb|EDN62263.1| V-ATPase V0 sector subunit c'' [Saccharomyces cerevisiae YJM789]
2.0E-41 [1..213] [1..213]
VATO_SCHPO - Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ...
vma16 - V-type ATPase subunit c''
4.0E-38 [20..212] [6..198]
VATL_TOBAC - V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1
2.0E-35 [52..211] [8..161]
VATO_MOUSE - V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0b PE=1 SV=1
3.0E-35 [21..208] [15..200]
VATL_SOLLC - V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1
gi|76160939, gi|... - gi|78191432|gb|ABB29937.1| vacuolar proton ATPase proteolipid subunit-like protein [Solanum tuberosu...
6.0E-35 [50..211] [5..160]
gi|113648765, gi... - gi|77553127|gb|ABA95923.1| V-type ATPase, C subunit [Oryza sativa (japonica cultivar-group)], gi|125...
gi|15186772 - gi|15186772|gb|AAK91135.1|AF286464_1 V-ATPase subunit c [Porteresia coarctata]
7.0E-35 [52..211] [8..161]
gi|755150 - gi|755150|gb|AAA82977.1| vacuolar H+-ATPase proteolipid (16 kDa) subunit
9.0E-35 [52..211] [8..161]
gi|226532363, gi... - gi|226532363|ref|NP_001148417.1| vacuolar ATP synthase 16 kDa proteolipid subunit [Zea mays], gi|226...
gi|357160712|ref... - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like isoform 3 [Brachypodium distachyon],...
gi|241936219, gi... - gi|242070199|ref|XP_002450376.1| hypothetical protein SORBIDRAFT_05g004510 [Sorghum bicolor], gi|241...
gi|54639893, gi|... - gi|54639893|gb|AAV36518.1| vacuolar ATPase subunit c isoform [Pennisetum glaucum], gi|15788970|gb|AA...
9.0E-35 [52..211] [8..161]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKESKDDDM SLGKFSFSHF LYYLVLIVVI VYGLYKLFTG HGSDINFGKF LLRTSPYMWA  60
   61 NLGIALCVGL SVVGAAWGIF ITGSSMIGAG VRAPRITTKN LISIIFCEVV AIYGLIIAIV 120
  121 FSSKLTVATA ENM

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 8.853872
Match: PF00137
Description: ATP synthase subunit C

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [134-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSKSNLYTGY SLFWAGITVG ASNLICGIAV GITGATAAIS DAADSALFVK ILVIEIFGSI  60
   61 LGLLGLIVGL LMAGKASEFQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle