YRC Public Data Repository - Protein Structure Prediction

Protein:	PPA1
Organism:	Saccharomyces cerevisiae
Length:	213 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPA1.

Description	E-value	Query Range	Subject Range
gi\|190405811 - gi\|190405811\|gb\|EDV09078.1\| proteolipid [Saccharomyces cerevisiae RM11-1a] PPA1 - Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole; one of three pr... VATO_YEAST - V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA16 P... gi\|151943970 - gi\|151943970\|gb\|EDN62263.1\| V-ATPase V0 sector subunit c'' [Saccharomyces cerevisiae YJM789]	2.0E-41	[1..213]	[1..213]
VATO_SCHPO - Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ... vma16 - V-type ATPase subunit c''	4.0E-38	[20..212]	[6..198]
VATL_TOBAC - V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1	2.0E-35	[52..211]	[8..161]
VATO_MOUSE - V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0b PE=1 SV=1	3.0E-35	[21..208]	[15..200]
VATL_SOLLC - V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1 gi\|76160939, gi\|... - gi\|78191432\|gb\|ABB29937.1\| vacuolar proton ATPase proteolipid subunit-like protein [Solanum tuberosu...	6.0E-35	[50..211]	[5..160]
gi\|113648765, gi... - gi\|77553127\|gb\|ABA95923.1\| V-type ATPase, C subunit [Oryza sativa (japonica cultivar-group)], gi\|125... gi\|15186772 - gi\|15186772\|gb\|AAK91135.1\|AF286464_1 V-ATPase subunit c [Porteresia coarctata]	7.0E-35	[52..211]	[8..161]
gi\|755150 - gi\|755150\|gb\|AAA82977.1\| vacuolar H+-ATPase proteolipid (16 kDa) subunit	9.0E-35	[52..211]	[8..161]
gi\|226532363, gi... - gi\|226532363\|ref\|NP_001148417.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Zea mays], gi\|226... gi\|357160712\|ref... - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like isoform 3 [Brachypodium distachyon],... gi\|241936219, gi... - gi\|242070199\|ref\|XP_002450376.1\| hypothetical protein SORBIDRAFT_05g004510 [Sorghum bicolor], gi\|241... gi\|54639893, gi\|... - gi\|54639893\|gb\|AAV36518.1\| vacuolar ATPase subunit c isoform [Pennisetum glaucum], gi\|15788970\|gb\|AA...	9.0E-35	[52..211]	[8..161]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKESKDDDM SLGKFSFSHF LYYLVLIVVI VYGLYKLFTG HGSDINFGKF LLRTSPYMWA  60
   61 NLGIALCVGL SVVGAAWGIF ITGSSMIGAG VRAPRITTKN LISIIFCEVV AIYGLIIAIV 120
  121 FSSKLTVATA ENM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.853872
Match:	PF00137
Description:	ATP synthase subunit C

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSKSNLYTGY SLFWAGITVG ASNLICGIAV GITGATAAIS DAADSALFVK ILVIEIFGSI  60
   61 LGLLGLIVGL LMAGKASEFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits