YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS27B
Organism:	Saccharomyces cerevisiae
Length:	82 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS27B.

Description	E-value	Query Range	Subject Range
gi\|50752813 - gi\|50752813\|ref\|XP_413758.1\| PREDICTED: similar to 40S ribosomal protein S27 [Gallus gallus]	160.0	[0..1]	[82..89]
gi\|37748758, gi\|... - gi\|41152144\|ref\|NP_957059.1\| ribosomal protein S27 [Danio rerio], gi\|37748758\|gb\|AAH59595.1\| Zgc:732...	152.0	[0..1]	[82..1]
gi\|61654754 - gi\|61654754\|gb\|AAX48903.1\| S27 [Suberites domuncula]	152.0	[0..1]	[82..1]
gi\|15294067 - gi\|15294067\|gb\|AAK95210.1\|AF402836_1 40S ribosomal protein S27-1 [Ictalurus punctatus]	152.0	[0..1]	[82..1]
gi\|60417166 - gi\|60417166\|emb\|CAH57694.1\| 40S ribosomal protein S27 [Platichthys flesus] gi\|47219459 - gi\|47219459\|emb\|CAG10823.1\| unnamed protein product [Tetraodon nigroviridis] gi\|124300839 - gi\|124300839\|dbj\|BAF45915.1\| ribosomal protein S27-1 [Solea senegalensis] gi\|229366996 - gi\|229366996\|gb\|ACQ58478.1\| 40S ribosomal protein S27 [Anoplopoma fimbria]	152.0	[0..1]	[82..1]
gi\|20530722 - gi\|20530722\|gb\|AAM27204.1\|AF502249_1 40s ribosomal protein S27 [Epinephelus coioides]	151.0	[0..1]	[82..1]
gi\|115975466, gi... - gi\|72016327\|ref\|XP_784036.1\| PREDICTED: similar to 40S ribosomal protein S27-1 [Strongylocentrotus p...	150.0	[0..1]	[82..1]
gi\|40643018 - gi\|40643018\|emb\|CAD91436.1\| ribosomal protein S27-1 [Crassostrea gigas]	148.0	[0..1]	[82..3]
gi\|114593347 - gi\|114593347\|ref\|XP_001164335.1\| PREDICTED: similar to metallopanstimulin [Pan troglodytes]	148.0	[0..1]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLVQDLLHP TAASEARKHK LKTLVQGPRS YFLDVKCPGC LNITTVFSHA QTAVTCESCS  60
   61 TVLCTPTGGK AKLSEGTSFR RK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.886057
Match:	PF01667.8
Description:	No description for PF01667.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.852	N/A	N/A	b.114.1	N-utilization substance G protein NusG, insert domain
View	Download	0.825	N/A	N/A	d.129.1	TATA-box binding protein-like
View	Download	0.823	N/A	N/A	b.71.1	Glycosyl hydrolase domain
View	Download	0.811	N/A	N/A	b.71.1	Glycosyl hydrolase domain
View	Download	0.808	N/A	N/A	b.71.1	Glycosyl hydrolase domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits