| Protein: | DED81 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 554 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DED81.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..554] | [1..554] |
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0.0 | [1..554] | [3..548] |
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0.0 | [1..554] | [11..558] |
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0.0 | [3..554] | [2..548] |
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0.0 | [3..554] | [2..548] |
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0.0 | [5..554] | [20..568] |
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0.0 | [78..551] | [8..499] |
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0.0 | [117..554] | [1..430] |
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0.0 | [117..554] | [1..430] |
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Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MSSLYIKEAT GVDELTTAGS QDHPFKTPAY ALFASQQKSD ATEPKLFVFK TEDNEYQEIS 60
61 ASALKKARKG CDGLKKKAVK QKEQELKKQQ KEAENAAKQL SALN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.577 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.624 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.541 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.631 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.517 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.504 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.484 | a.24.3 | Cytochromes |
| View | Download | 0.476 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.450 | a.24.3 | Cytochromes |
| View | Download | 0.446 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.436 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.424 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.412 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.405 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.402 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.384 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.377 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.373 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.371 | a.7.7 | BAG domain |
| View | Download | 0.351 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.346 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.336 | a.1.1 | Globin-like |
| View | Download | 0.336 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.332 | a.7.8 | GAT domain |
| View | Download | 0.329 | a.47.2 | t-snare proteins |
| View | Download | 0.317 | a.46.1 | Methionine synthase domain |
| View | Download | 0.307 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.303 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.302 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.300 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.298 | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.298 | a.24.3 | Cytochromes |
| View | Download | 0.290 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.286 | a.130.1 | Chorismate mutase II |
| View | Download | 0.276 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.276 | d.68.3 | SirA-like |
| View | Download | 0.273 | a.47.2 | t-snare proteins |
| View | Download | 0.266 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.266 | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.261 | a.2.3 | Chaperone J-domain |
| View | Download | 0.260 | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.257 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.251 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.244 | c.8.7 | RraA-like |
| View | Download | 0.239 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.233 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.225 | c.55.4 | Translational machinery components |
| View | Download | 0.222 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.214 | b.82.4 | Regulatory protein AraC |
| View | Download | 0.212 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.210 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.208 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.206 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.206 | a.7.4 | Smac/diablo |
| View | Download | 0.205 | a.48.1 | N-terminal domain of cbl (N-cbl) |
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Region A: Residues: [105-226] |
1 11 21 31 41 51
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1 ITIKEDESLP AAIKTRIYDS YSKVGQRVKV SGWIHRLRSN KKVIFVVLRD GSGFIQCVLS 60
61 GDLALAQQTL DLTLESTVTL YGTIVKLPEG KTAPGGVELN VDYYEVVGLA PGGEDSFTNK 120
121 IA
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| Detection Method: | |
| Confidence: | 611.9897 |
| Match: | 1b8aA_ |
| Description: | Aspartyl-tRNA synthetase (AspRS) |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [227-554] |
1 11 21 31 41 51
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1 EGSDPSLLLD QRHLALRGDA LSAVMKVRAA LLKSVRRVYD EEHLTEVTPP CMVQTQVEGG 60
61 STLFKMNYYG EEAYLTQSSQ LYLETCLASL GDVYTIQESF RAEKSHTRRH LSEYTHIEAE 120
121 LAFLTFDDLL QHIETLIVKS VQYVLEDPIA GPLVKQLNPN FKAPKAPFMR LQYKDAITWL 180
181 NEHDIKNEEG EDFKFGDDIA EAAERKMTDT IGVPIFLTRF PVEIKSFYMK RCSDDPRVTE 240
241 SVDVLMPNVG EITGGSMRID DMDELMAGFK REGIDTDAYY WFIDQRKYGT CPHGGYGIGT 300
301 ERILAWLCDR FTVRDCSLYP RFSGRCKP
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| Detection Method: | |
| Confidence: | 611.9897 |
| Match: | 1b8aA_ |
| Description: | Aspartyl-tRNA synthetase (AspRS) |
| Matching Structure (courtesy of the PDB): |
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