YRC Public Data Repository - Protein Structure Prediction

Protein:	YHR003C
Organism:	Saccharomyces cerevisiae
Length:	429 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR003C.

Description	E-value	Query Range	Subject Range
gi\|51012833 - gi\|51012833\|gb\|AAT92710.1\| YKL027W [Saccharomyces cerevisiae]	368.0	[0..4]	[429..5]
gi\|49643930 - gi\|49643930\|emb\|CAG99882.1\| KLLA0E18679p [Kluyveromyces lactis] gi\|49643930, gi\|... - gi\|50309567\|ref\|XP_454795.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643930\|emb\|CAG9988...	354.0	[0..1]	[429..1]
gi\|50291839, gi\|... - gi\|50291839\|ref\|XP_448352.1\| unnamed protein product [Candida glabrata], gi\|49527664\|emb\|CAG61313.1\|... gi\|49527664 - gi\|49527664\|emb\|CAG61313.1\| unnamed protein product [Candida glabrata]	335.0	[0..1]	[429..1]
SPAC1A6.10 - Moeb /ThiF domain TCD_SCHPO - tRNA threonylcarbamoyladenosine dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	332.0	[0..32]	[428..84]
gi\|44985800 - gi\|44985800\|gb\|AAS54424.1\| AGL066Wp [Ashbya gossypii ATCC 10895] gi\|44985800, gi\|... - gi\|45201030\|ref\|NP_986600.1\| AGL066Wp [Ashbya gossypii ATCC 10895], gi\|44985800\|gb\|AAS54424.1\| AGL06...	331.0	[0..48]	[429..60]
CG13090-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG13090 (CG13090, FBgn0032054). It is a prote...	309.0	[0..3]	[370..25]
gi\|49652304, gi\|... - gi\|50406518\|ref\|XP_456640.1\| hypothetical protein DEHA0A07326g [Debaryomyces hansenii CBS767], gi\|49...	309.0	[0..46]	[429..21]
orf19.9663 - orf19.2115 CGDID:CAL0005281 Assembly 19, Contig19-20139 (213835, 215139) CDS, translated using codon... gi\|46441513, gi\|... - gi\|68472735\|ref\|XP_719686.1\| hypothetical protein CaO19.9663 [Candida albicans SC5314], gi\|46441513\|...	300.0	[0..50]	[429..48]

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Predicted Domain #1

Region A:
Residues: [1-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNTWKLIA TTALISVFST QLAKSVWKEY KLSCAANKNK TVSRPRQYDD HLFREQLARN  60
   61 YAFLGEEGMR KIKEQYIVIV GAGEVGSWVC TMLIRSGCQK IMIIDPENIS IDSLNTHCCA 120
  121 VLSDIGKPKV QCLKEHLSKI APWSEIKARA KAWTKENSHD LIFADGESPT FIVDCLDNLE 180
  181 SKVDLLEYAH HNKIDVISSM GVATKSDPTR VSINDISMTE FDPISRCVRR KLRKRGIATG 240
  241 ISVVFSNEML DPRRDDILSP IDCEHRAINA VRDEALRHLP ELGTMPGIFG LSIATWILTK 300
  301 VSGYPMKENE VKNRLKFYDS ILETFQKQMA RLNENKERSS LLGLEEVGYI VEEMFRGKSP 360
  361 I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	129.502279
Match:	1jw9B
Description:	Molybdenum cofactor biosynthesis protein MoeB
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [362-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGYSTKLALT KWEANKEISL TNVVLMTKEE QEIHEKRILL DGEKLTAVYS EEVLDFIERL  60
   61 FKEEEYYS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits