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View Structure Prediction Details

Protein: YHL049C
Organism: Saccharomyces cerevisiae
Length: 271 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHL049C.

Description E-value Query
Range
Subject
Range
YRF1-8, YRF1-5, ... - One of several telomeric Y' element-encoded DNA helicases, known as Y'-Help1 (Y'-HELicase Protein 1)...
YRF18_YEAST, YRF... - Y' element ATP-dependent helicase protein 1 copy 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...
551.0 [0..1] [267..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSDRRKFE KANFDEFESA LNNKNDLVHC PSITLFESIP TEVRSFYEDE KSGLIKVVKF  60
   61 RTGAMDRKRS FEKIVVSVMV GKNVQKFLTF VEDEPDFQGG PIPSKYLIPK KINLMVYTLF 120
  121 QVHTLKFNRK DYDTLSLFYL NRGYYNELSF RVLERCHEIA SARPNDSSTM RTFTDFVSGA 180
  181 PIVRSLQKST IRKYGYNLAP HMFLLLHVD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELSIFSAYQA SLPGEKKVDT ERLKRDLCPR KPTEIKYFSQ ICNDMMNKKD RLGDVLHVCC  60
   61 PS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.804 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.804 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.696 N/A N/A a.39.1 EF-hand
View Download 0.648 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.602 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.597 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.580 N/A N/A a.118.1 ARM repeat
View Download 0.562 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.561 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.560 N/A N/A a.64.2 Bacteriocin AS-48


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle