YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS20
Organism:	Saccharomyces cerevisiae
Length:	121 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS20.

Description	E-value	Query Range	Subject Range
RS20_XENLA - 40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1	9.0E-36	[10..120]	[8..118]
gi\|15213828 - gi\|15213828\|gb\|AAK92189.1\|AF400217_1 ribosomal protein S20 [Spodoptera frugiperda]	1.0E-35	[7..120]	[9..122]
RpS20-PA - The gene Ribosomal protein S20 is referred to in FlyBase by the symbol Dmel\RpS20 (CG15693, FBgn0019...	4.0E-35	[7..120]	[6..120]
gi\|225708256 - gi\|225708256\|gb\|ACO09974.1\| 40S ribosomal protein S20 [Osmerus mordax] gi\|213511786, gi... - gi\|223672421\|gb\|ACN12392.1\| 40S ribosomal protein S20 [Salmo salar], gi\|223672103\|gb\|ACN12233.1\| 40S... gi\|185135786, gi... - gi\|225703740\|gb\|ACO07716.1\| 40S ribosomal protein S20 [Oncorhynchus mykiss], gi\|185135786\|ref\|NP_001...	5.0E-35	[10..120]	[8..118]
tr\|G1SIZ2\|G1SIZ2... - pep:known chromosome:oryCun2:3:71607725:71609256:-1 gene:ENSOCUG00000003068 transcript:ENSOCUT000000... RS20_BOVIN - 40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1 gi\|149721389 - gi\|149721389\|ref\|XP_001497631.1\| PREDICTED: similar to ribosomal protein S20 [Equus caballus] gi\|73999396, gi\|... - gi\|73999396\|ref\|XP_535079.2\| PREDICTED: similar to 40S ribosomal protein S20 [Canis familiaris], gi\|... gi\|109086434, gi... - gi\|109086436\|ref\|XP_001085267.1\| PREDICTED: similar to 40S ribosomal protein S20 isoform 2 [Macaca m... RS20_MACFA - 40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1 gi\|124000063, gi... - gi\|60656093\|gb\|AAX32610.1\| ribosomal protein S20 [synthetic construct], gi\|208967328\|dbj\|BAG73678.1\|... gi\|57720 - gi\|57720\|emb\|CAA35917.1\| unnamed protein product [Rattus rattus] RS20_RAT - 40S ribosomal protein S20 OS=Rattus norvegicus GN=Rps20 PE=3 SV=1 RS20_MOUSE - 40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1 tr\|M3XBC9\|M3XBC9... - Ribosomal protein S20 OS=Felis catus GN=RPS20 PE=3 SV=1 RPS20 - ribosomal protein S20 gi\|114620190, gi... - gi\|114620194\|ref\|XP_001154632.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes], gi\|114...	5.0E-35	[10..120]	[8..118]
gi\|15294053 - gi\|15294053\|gb\|AAK95203.1\|AF402829_1 40S ribosomal protein S20 [Ictalurus punctatus]	8.0E-35	[10..120]	[8..118]
gi\|1075260 - gi\|1075260\|pir\|\|D64092 ribosomal protein S10 - Haemophilus influenzae (strain Rd KW20) gi\|46133133 - gi\|46133133\|ref\|ZP_00156632.2\| COG0051: Ribosomal protein S10 [Haemophilus influenzae R2866] gi\|48868599 - ref\|ZP_00321912.1\| COG0051: Ribosomal protein S10 [Haemophilus influenzae 86-028NP] gi\|1573786, gi\|1... - gi\|16272717\|ref\|NP_438935.1\| 30S ribosomal protein S10 [Haemophilus influenzae Rd KW20], gi\|1573786\|...	4.0E-32	[17..118]	[16..117]
RR10_ARATH - 30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1	4.0E-32	[9..118]	[82..191]
RR10_MESCR - 30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1	9.0E-32	[11..118]	[90..197]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFQKEKVE EQEQQQQQII KIRITLTSTK VKQLENVSSN IVKNAEQHNL VKKGPVRLPT  60
   61 KVLKISTRKT PNGEGSKTWE TYEMRIHKRY IDLEAPVQIV KRITQITIEP GVDVEVVVAS 120
  121 N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	406.70927
Match:	1k5xJ_
Description:	No description for 1k5xJ_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits