YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL14B
Organism:	Saccharomyces cerevisiae
Length:	138 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL14B.

Description	E-value	Query Range	Subject Range
gi\|114586294 - gi\|114586294\|ref\|XP_001135032.1\| PREDICTED: similar to Ribosomal protein L14 [Pan troglodytes]	200.0	[0..9]	[137..95]
gi\|114145740, gi... - gi\|62661762\|ref\|XP_224414.3\| PREDICTED: similar to LRRGT00066 [Rattus norvegicus], gi\|37361818\|gb\|AA...	194.0	[0..12]	[137..145]
RL14_BOVIN - 60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3	191.0	[0..9]	[137..1]
gi\|12846159 - gi\|12846159\|dbj\|BAB27053.1\| unnamed protein product [Mus musculus]	191.0	[0..9]	[137..1]
gi\|12381873 - gi\|12381873\|dbj\|BAB21246.1\| ribosomal protein L14 [Gallus gallus]	188.0	[0..9]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDSIVKAS NWRLVEVGRV VLIKKGQSAG KLAAIVEIID QKKVLIDGPK AGVPRQAINL  60
   61 GQVVLTPLTF ALPRGARTAT VSKKWAAAGV CEKWAASSWA KKIAQRERRA ALTDFERFQV 120
  121 MVLRKQKRYT VKKALAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	2joyA
Description:	No description for 2joyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits