YRC Public Data Repository - Protein Structure Prediction

Protein:	ERV29
Organism:	Saccharomyces cerevisiae
Length:	310 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERV29.

Description	E-value	Query Range	Subject Range
ERV29 - Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of speci... ERV29_YEAST - ER-derived vesicles protein ERV29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV29 ...	0.0	[1..310]	[1..310]
SURF4_TAKRU - Surfeit locus protein 4 OS=Takifugu rubripes GN=surf4 PE=3 SV=1	1.0E-82	[48..308]	[4..267]
SPCC970.06 - cargo receptor for soluble proteins SURF4_SCHPO - Surfeit locus protein 4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC970.06...	5.0E-82	[1..310]	[1..302]
ENSPTRT00000039854 - null gi\|123997081, gi... - gi\|123997081\|gb\|ABM86142.1\| surfeit 4 [synthetic construct], gi\|123982418\|gb\|ABM82950.1\| surfeit 4 [... SURF4 - surfeit 4 SURF4_PONPY - Surfeit locus protein 4 - Pongo pygmaeus (Orangutan) SURF4_PONAB - Surfeit locus protein 4 OS=Pongo abelii GN=SURF4 PE=2 SV=1	9.0E-82	[49..308]	[5..267]
SURF4_MOUSE - Surfeit locus protein 4 OS=Mus musculus GN=Surf4 PE=1 SV=1 gi\|55250527 - gb\|AAH86249.1\| Unknown (protein for MGC:98765) [Xenopus laevis] gi\|76443685, gi\|... - gi\|76443685\|ref\|NP_001029040.1\| surfeit 4 [Rattus norvegicus], ref\|XP_216028.2\| similar to Surf-4 pr...	2.0E-81	[49..308]	[5..267]
Surf4-PA - The gene Surfeit 4 is referred to in FlyBase by the symbol Dmel\Surf4 (CG6202, FBgn0019925). It is a...	1.0E-78	[53..308]	[10..268]
sft-4 - status:Confirmed UniProt:Q18864 protein_id:AAB00591.1	5.0E-76	[53..308]	[16..275]

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Predicted Domain #1

Region A:
Residues: [1-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYRGPIGNF GGMPMSSSQG PYSGGAQFRS NQNQSTSGIL KQWKHSFEKF ASRIEGLTDN  60
   61 AVVYKLKPYI PSLSRFFIVA TFYEDSFRIL SQWSDQIFYL NKWKHYPYFF VVVFLVVVTV 120
  121 SMLIGASLLV LRKQTNYATG VLCACVISQA LVYGLFTGSS FVLRNFSVIG GLLIAFSDSI 180
  181 VQNKTTFGML PELNSKNDKA KGYLLFAGRI LIVLMFIAFT FSKSWFTVVL TIIGTICFAI 240
  241 GYKTKFASIM LGLILTFYNI TLNNYWFYNN TKRDFLKYEF YQNLSIIGGL LLVTNTGAGE 300
  301 LSVDEKKKIY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	179.769551
Match:	PF02077
Description:	SURF4 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits