YRC Public Data Repository - Protein Structure Prediction

Protein:	RTT102
Organism:	Saccharomyces cerevisiae
Length:	186 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTT102.

Description	E-value	Query Range	Subject Range
RT102_YEAST - Regulator of Ty1 transposition protein 102 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ... RTT102 - Component of both the SWI/SNF and RSC chromatin remodeling complexes, suggested role in chromosome m...	320.0	[0..30]	[186..1]
gi\|44985464 - gi\|44985464\|gb\|AAS54160.1\| AGL331Cp [Ashbya gossypii ATCC 10895] gi\|44985464, gi\|... - gi\|45200766\|ref\|NP_986336.1\| AGL331Cp [Ashbya gossypii ATCC 10895], gi\|44985464\|gb\|AAS54160.1\| AGL33...	70.0	[0..34]	[170..2]
gi\|49640570 - gi\|49640570\|emb\|CAH03027.1\| KLLA0A10043p [Kluyveromyces lactis] gi\|50303003, gi\|... - gi\|50303003\|ref\|XP_451439.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640570\|emb\|CAH0302...	57.0	[0..34]	[181..2]
gi\|50287905, gi\|... - gi\|50287905\|ref\|XP_446382.1\| unnamed protein product [Candida glabrata], gi\|49525690\|emb\|CAG59309.1\|... gi\|49525690 - gi\|49525690\|emb\|CAG59309.1\| unnamed protein product [Candida glabrata]	47.0	[0..30]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSTSLLMN KAIKPNVGKK ELRQQEIEKM DPQTLITKAN KVSYYGNPTS KESWRYDWYQ  60
   61 PSKVSSNVQQ PQQQLGDMEN NLEKYPFRYK TWLRNQEDEK NLQRESCEDI LDLKEFDRRI 120
  121 LKKSLMTSHT KGDTSKATGA PSANQGDEAL SVDDIRGAVG NSEAIPGLSA GVNNDNTKES 180
  181 KDVKMN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	93.267606
Match:	PF09510.1
Description:	No description for PF09510.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits