YRC Public Data Repository - Protein Structure Prediction

Protein:	YGR272C
Organism:	Saccharomyces cerevisiae
Length:	152 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR272C.

Description	E-value	Query Range	Subject Range
gi\|51969290, gi\|... - gi\|51969354\|dbj\|BAD43369.1\| unknown protein [Arabidopsis thaliana], gi\|51969290\|dbj\|BAD43337.1\| unkn...	170.0	[0..2]	[141..7]
gi\|2130250 - gi\|2130250\|pir\|\|S62533 hypothetical protein SPAC12G12.02 - fission yeast (Schizosaccharomyces pombe...	155.0	[0..18]	[145..1]
EFG1P_SCHPO - rRNA-processing protein efg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=efg1 PE=3 SV=... SPAC12G12.02 - rRNA processing protein, unnamed	150.0	[0..18]	[145..1]
EFG1P_CANGA - rRNA-processing protein EFG1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 ... EFG1P_CANGA - rRNA-processing protein EFG1 OS=Candida glabrata GN=EFG1 PE=3 SV=1	128.0	[0..3]	[144..5]
gi\|44981062 - gi\|44981062\|gb\|AAS50914.1\| ABR143Cp [Ashbya gossypii ATCC 10895] gi\|45185373, gi\|... - gi\|45185373\|ref\|NP_983090.1\| ABR143Cp [Ashbya gossypii ATCC 10895], gi\|44981062\|gb\|AAS50914.1\| ABR14...	125.0	[0..3]	[142..30]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLQRKRSK ALGSSLEMSQ IMDAGTNKIK RRIRDLERLL KKKKDILPST VIIEKERNLQ  60
   61 ALRLELQNNE LKNKIKANAK KYHMVRFFEK KKALRKYNRL LKKIKESGAD DKDLQQKLRA 120
  121 TKIELCYVIN FPKTEKYIAL YPNDTPSTDP KA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.21
Match:	1rh1A
Description:	crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits