YRC Public Data Repository - Protein Structure Prediction

Protein:	MTM1
Organism:	Saccharomyces cerevisiae
Length:	366 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTM1.

Description	E-value	Query Range	Subject Range
MTM1 - Mitochondrial protein of the mitochondrial carrier family, involved in activating mitochondrial Sod2... MTM1_YEAST - Mitochondrial carrier protein MTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTM1 ...	2.0E-82	[1..366]	[1..366]
S2539_MOUSE - Solute carrier family 25 member 39 OS=Mus musculus GN=Slc25a39 PE=2 SV=1	2.0E-76	[1..366]	[1..353]
UCP3_BOVIN - Mitochondrial uncoupling protein 3 OS=Bos taurus GN=UCP3 PE=2 SV=1	8.0E-75	[54..362]	[10..302]
SLC25A31 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 gi\|117645348 - gi\|117645348\|emb\|CAL38140.1\| hypothetical protein [synthetic construct] HGNC:25319\|MIM:6... - carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	2.0E-74	[45..361]	[8..309]
ADT1_MAIZE - ADP,ATP carrier protein 1, mitochondrial OS=Zea mays GN=ANT1 PE=2 SV=3	7.0E-74	[40..365]	[70..383]
gi\|53829363, gi\|... - gi\|53829363\|gb\|AAU94638.1\| uncoupling protein 3 [Sus scrofa], gi\|4928052\|gb\|AAD33396.1\| uncoupling p...	9.0E-74	[52..362]	[8..302]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRNTSNSL TLKERMLSAG AGSVLTSLIL TPMDVVRIRL QQQQMIPDCS CDGAAEVPNA  60
   61 VSSGSKMKTF TNVGGQNLNN AKIFWESACF QELHCKNSSL KFNGTLEAFT KIASVEGITS 120
  121 LWRGISLTLL MAIPANMVYF SGYEYIRDVS PIASTY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.49485
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTLNPLFCGA IARVFAATSI APLELVKTKL QSIPRSSKST KTWMMVKDLL NETRQEMKMV  60
   61 GPSRALFKGL EITLWRDVPF SAIYWSSYEL CKERLWLDST RFASKD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.958607
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [263-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANWVHFINSF ASGCISGMIA AICTHPFDVG KTRWQISMMN NSDPKGGNRS RNMFKFLETI  60
   61 WRTEGLAALY TGLAARVIKI RPSCAIMISS YEISKKVFGN KLHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.075721
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits