Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR250C.
| Description | E-value | Query Range |
Subject Range |
|
|
491.0 | [0..187] | [779..3] |
|
|
476.0 | [0..191] | [779..7] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MNIAEEPSDE VISSGPEDTD ICSQQTSASA EAGDQSIKIE RKTSTGLQLE QLANTNLLTI 60
61 RIKWQLQEEE DDHCNSRITD QIMDTIQHYK GISV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.906 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.706 | d.58.50 | Description not found. |
| View | Download | 0.686 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.683 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.650 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.650 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.635 | d.237.1 | Hypothetical protein YjiA, C-terminal domain |
| View | Download | 0.623 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.578 | d.93.1 | SH2 domain |
|
Region A: Residues: [95-186] |
1 11 21 31 41 51
| | | | | |
1 NNSDTETYEF LPDTRRLQVL EQNKDIYLYE HGSQEYEKSY KDNEEEDDWR YDTVLQAQFK 60
61 YPKSLENACT DISELLKSEP IGQHIDKWSI GV
|
| Detection Method: | |
| Confidence: | 117.38764 |
| Match: | 1fxlA |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [187-281] |
1 11 21 31 41 51
| | | | | |
1 NKHALTYPGN IFVGGIAKSL SIGELSFLFS KYGPILSMKL IYDKTKGEPN GYGFISYPLG 60
61 SQASLCIKEL NGRTVNGSTL FINYHVERKE RERIH
|
| Detection Method: | |
| Confidence: | 123.218487 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [282-430] |
1 11 21 31 41 51
| | | | | |
1 WDHVKENNND DNFRCLFIGN LPYHNPEKVE TLITPKEVIE VIKKELSKKF PDFDIISYYF 60
61 PKRSNTRSSS SVSFNEEGSV ESNKSSNNTN GNAQDEDMLK GYGFIKLINH EQALAAIETF 120
121 NGFMWHGNRL VVNKAVQHKV YNNHNSHDR
|
| Detection Method: | |
| Confidence: | 123.218487 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [431-530] |
1 11 21 31 41 51
| | | | | |
1 HPSISNHNDM EVLEFANNPM YDYNNYTYDR YYFNNNKNGN SNDTSNVRYF DSVRSTPVAE 60
61 KMDLFYPQRE SFSEGRGQRV PRFMGNKFDM YQYPSTSYSL
|
| Detection Method: | |
| Confidence: | 32.491979 |
| Match: | 2u2fA |
| Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [531-697] |
1 11 21 31 41 51
| | | | | |
1 PIPMSNQQES NLYVKHIPLS WTDEDLYDFY KSFGEIISVK VITVGGSKNK YRQQSNDSSS 60
61 DNDLPVGSSR GYGFVSFESP LDAAKAILNT DGYQVSKDQV LSVSFAQKRG NLSSSDDDDQ 120
121 SQTDNSSKFQ NFQPHNDYHK AYPTKYNKKF INALMTQNQS QQQVSRE
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1bnyA_ |
| Description: | No description for 1bnyA_ was found. |
|
Region A: Residues: [698-781] |
1 11 21 31 41 51
| | | | | |
1 NYFIPLQYPN TNTKPVNSYN LISANQNNAN WMMPMFPSFG FIPQVPPVPY IIPPQNPAAN 60
61 HIPIMANGSN EEEEFSSGDY SMDY
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
