YRC Public Data Repository - Protein Structure Prediction

Protein:	SPG1
Organism:	Saccharomyces cerevisiae
Length:	129 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPG1.

Description	E-value	Query Range	Subject Range
SPG1_YEAST - Stationary phase gene 1 protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPG1 PE=... SPG1_YEAS7 - Stationary phase gene 1 protein OS=Saccharomyces cerevisiae (strain YJM789) GN=SPG1 PE=3 SV=1 SPG1_YEAS1 - Stationary phase-expressed protein 1 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SPG1 PE=3 SV=1 SPG1 - Protein required for survival at high temperature during stationary phase; not required for growth o...	189.0	[0..1]	[91..1]
gi\|50287769, gi\|... - gi\|50287769\|ref\|XP_446314.1\| unnamed protein product [Candida glabrata], gi\|49525621\|emb\|CAG59238.1\|... gi\|49525621 - gi\|49525621\|emb\|CAG59238.1\| unnamed protein product [Candida glabrata]	55.0	[0..1]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDSGIYSE AQRVVRTPKF RYIMLGLVGA AVVPTAYMRR GYTVPAHSLD NINGVDTTKA  60
   61 SVMGTEQRAA MTKGKSLQEM MDDDEVTYLM FLFNHVREFV LGSLHLCSLH FVFAFNHSTT 120
  121 NGEGDCDFT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits