YRC Public Data Repository - Protein Structure Prediction

Protein:	YGR235C
Organism:	Saccharomyces cerevisiae
Length:	233 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR235C.

Description	E-value	Query Range	Subject Range
MIC26_YEAST - MICOS subunit MIC26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIC26 PE=1 SV=1 gi\|151943509 - gi\|151943509\|gb\|EDN61820.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406759 - gi\|190406759\|gb\|EDV10026.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YGR235C - Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi...	0.0	[1..233]	[1..233]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDFYRQLD PVEEKIVPPE NAIVISSEAK EATVNEKEAK QGVLSQRVMK YIGENELVDG  60
   61 ISVRDPDYLK RFFNERRKQF SAKWDKVTNK IDDIAGRYYA REESFTSTIA SLHTDPNERL 120
  121 IPGLLSILVA SMTGSVLARR RTWLLRATMP IILGSCCFAY AMPTTFRNTM GLIHNLEMNT 180
  181 FPHFTERQDR VWKETKRLST ASVQYYYDAK KWLNKDVEKT GNAIKNWTGV NVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits