YRC Public Data Repository - Protein Structure Prediction

Protein:	RSM27
Organism:	Saccharomyces cerevisiae
Length:	110 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM27.

Description	E-value	Query Range	Subject Range
gi\|49643810, gi\|... - gi\|50309337\|ref\|XP_454675.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643810\|emb\|CAG9976... gi\|49643810 - gi\|49643810\|emb\|CAG99762.1\| KLLA0E16127p [Kluyveromyces lactis]	126.0	[0..1]	[109..1]
gi\|49524371, gi\|... - gi\|50285279\|ref\|XP_445068.1\| unnamed protein product [Candida glabrata], gi\|49524371\|emb\|CAG57968.1\|... gi\|49524371 - gi\|49524371\|emb\|CAG57968.1\| unnamed protein product [Candida glabrata]	125.0	[0..1]	[110..1]
RT27_SCHPO - 37S ribosomal protein S27, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=r... rsm27 - mitochondrial ribosomal protein subunit S27	125.0	[0..5]	[86..4]
gi\|44981265, gi\|... - gi\|45185547\|ref\|NP_983263.1\| ACL141Cp [Ashbya gossypii ATCC 10895], gi\|44981265\|gb\|AAS51087.1\| ACL14... gi\|44981265 - gi\|44981265\|gb\|AAS51087.1\| ACL141Cp [Ashbya gossypii ATCC 10895]	125.0	[0..1]	[107..18]
gi\|32415441, gi\|... - gi\|7800876\|emb\|CAB91234.1\| conserved hypothetical protein [Neurospora crassa], gi\|32415441\|ref\|XP_32... gi\|85083775 - gi\|85083775\|ref\|XP_957184.1\| hypothetical protein NCU01761 [Neurospora crassa OR74A]	102.0	[0..1]	[53..1]
gi\|38105096, gi\|... - gi\|39942156\|ref\|XP_360615.1\| hypothetical protein MG03158.4 [Magnaporthe grisea 70-15], gb\|EAA51563....	97.0	[0..1]	[85..1]
gi\|116204685, gi... - gi\|88176354\|gb\|EAQ83822.1\| hypothetical protein CHGG_10226 [Chaetomium globosum CBS 148.51], gi\|1162...	91.0	[0..1]	[84..1]
gi\|114189441, gi... - gi\|115432904\|ref\|XP_001216589.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	87.0	[0..1]	[103..1]
gi\|42551236, gi\|... - gi\|46121647\|ref\|XP_385378.1\| hypothetical protein FG05202.1 [Gibberella zeae PH-1], gi\|42551236\|gb\|E...	84.0	[0..1]	[94..1]
gi\|169612531, gi... - gi\|169612531\|ref\|XP_001799683.1\| hypothetical protein SNOG_09388 [Phaeosphaeria nodorum SN15], gi\|11...	80.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVPKARLLK VAELSAKIFD QNFNPSGIRT GSKILNERLK GPSVASYYGN PDILKFRHLK  60
   61 TLYPDIEFVD LEEQYRLSMV EAKKRRGKGA PKKMKKDAAA TAKGKGKKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.29243
Match:	PF08293.2
Description:	No description for PF08293.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits