YRC Public Data Repository - Protein Structure Prediction

Protein:	RTA1
Organism:	Saccharomyces cerevisiae
Length:	317 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTA1.

Description	E-value	Query Range	Subject Range
gi\|51013737 - gi\|51013737\|gb\|AAT93162.1\| YGR213C [Saccharomyces cerevisiae]	409.0	[0..1]	[317..1]
gi\|90300648, gi\|... - gi\|90300648\|gb\|EAS30279.1\| hypothetical protein CIMG_05758 [Coccidioides immitis RS], gi\|119181260\|r... gi\|240108922 - gi\|240108922\|gb\|EER27091.1\| parasitic phase-specific protein PSP-1 [Coccidioides posadasii C735 delt...	278.0	[0..6]	[275..16]
gi\|16904126 - gi\|16904126\|gb\|AAL30767.1\|AF435426_1 parasitic phase-specific protein PSP-1 [Coccidioides posadasii]	274.0	[0..10]	[275..5]
gi\|49527567 - gi\|49527567\|emb\|CAG61216.1\| unnamed protein product [Candida glabrata] gi\|50291645, gi\|... - gi\|50291645\|ref\|XP_448255.1\| unnamed protein product [Candida glabrata], gi\|49527567\|emb\|CAG61216.1\|...	267.0	[0..6]	[317..15]
YEO2_SCHPO - Uncharacterized protein C17G6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G6... SPAC17G6.02c - RTA1-like protein	243.0	[0..9]	[273..7]
gi\|60473563, gi\|... - gi\|66824171\|ref\|XP_645440.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60473563\|gb\|EAL... gi\|60473563, gi\|... - gi\|60473563\|gb\|EAL71505.1\| hypothetical protein DDB0168536 [Dictyostelium discoideum], gi\|28830189\|g...	232.0	[0..8]	[275..17]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDGFELYR YTPELGASIL FTVLFAVSGV AFVILLFHYS VKSKRRVGSL MKSQPVLRYY  60
   61 GTVNLAGAYI PFIFGCFVEC VGFAFRCKSS KDTTLLNPYI IQTVFLLVSP TLYAASIYMI 120
  121 FGRMATLLFA ENLMIMPA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [139-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFNTTIFVIG DVGSLLLQAI GGAMMSKVTS ASSGSHLVTA GLFIQIAFFG LFIINEVLFI  60
   61 FKMSKKPTNV SVRYGSWKYL NIALLVNSFL ILIRSIVRAV EFIQGYDGEI ASHEWYLYIF 120
  121 DGLPMFLLVL IFIVAFPLIN IFRIHEESIQ AQQSARFDGT DYPDVEVTSI EEDLASKSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits