YRC Public Data Repository - Protein Structure Prediction

Protein:	MVB12
Organism:	Saccharomyces cerevisiae
Length:	101 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MVB12.

Description	E-value	Query Range	Subject Range
gi\|49527574 - gi\|49527574\|emb\|CAG61223.1\| unnamed protein product [Candida glabrata] gi\|49527574, gi\|... - gi\|50291659\|ref\|XP_448262.1\| unnamed protein product [Candida glabrata], gi\|49527574\|emb\|CAG61223.1\|...	102.0	[0..4]	[98..8]
gi\|44981278, gi\|... - gi\|45185560\|ref\|NP_983276.1\| ACL128Cp [Ashbya gossypii ATCC 10895], gi\|44981278\|gb\|AAS51100.1\| ACL12... gi\|44981278 - gi\|44981278\|gb\|AAS51100.1\| ACL128Cp [Ashbya gossypii ATCC 10895]	64.0	[0..5]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNVEELLR RIPLYNKYGK DFPQETVTRF QMPEFKLPAL QPTRDLLCPW YEECDNITKV  60
   61 CQLHDSSNKK FDQWYKEQYL SKKPPGIVGN TLLSPSRKDN S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	2p22D
Description:	No description for 2p22D was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits