YRC Public Data Repository - Protein Structure Prediction

Protein:	CBP4
Organism:	Saccharomyces cerevisiae
Length:	170 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBP4.

Description	E-value	Query Range	Subject Range
gi\|505646 - gi\|505646\|gb\|AAA61566.1\| Cbp4p	303.0	[0..1]	[170..1]
CBP4_CANGA - Assembly factor CBP4 OS=Candida glabrata GN=CBP4 PE=3 SV=1 CBP4_CANGA - Assembly factor CBP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y...	160.0	[0..24]	[170..1]
CBP4_ASHGO - Assembly factor CBP4 OS=Ashbya gossypii GN=CBP4 PE=3 SV=1 CBP4_ASHGO - Assembly factor CBP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) G...	160.0	[0..24]	[167..1]
CBP4_KLULA - Assembly factor CBP4 OS=Kluyveromyces lactis GN=CBP4 PE=3 SV=1 CBP4_KLULA - Assembly factor CBP4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / ...	150.0	[0..24]	[170..1]
gi\|49657824, gi\|... - gi\|50427093\|ref\|XP_462154.1\| hypothetical protein DEHA0G14993g [Debaryomyces hansenii CBS767], gi\|49...	116.0	[0..25]	[153..3]
CBP4_CANAL - Assembly factor CBP4 OS=Candida albicans GN=CBP4 PE=3 SV=1 gi\|238878732 - gi\|238878732\|gb\|EEQ42370.1\| hypothetical protein CAWG_00579 [Candida albicans WO-1] CBP4_CANAL - Assembly factor CBP4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBP4 PE=3 SV=1	111.0	[0..26]	[170..5]
SPBC27B12.14 - mitochondrial membrane protein complex assembly protein CBP4_SCHPO - Assembly factor cbp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cbp4 PE=3 SV=1	102.0	[0..35]	[96..9]
CBP4_YARLI - Assembly factor CBP4 OS=Yarrowia lipolytica GN=CBP4 PE=3 SV=1 CBP4_YARLI - Assembly factor CBP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CBP4 PE=3 SV=1	62.0	[0..26]	[146..15]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQCAITPREA VIAKQRQYKH YLGMERPLWV RWLKVYAIGG AIIGSGFLLF KYTTPTDQQL  60
   61 ISQLSPELRL QYEREKKLRQ SEQQALMKIV KETSQSDDPI WKTGPLQSPW ERNGDNVQSR 120
  121 DHFAKVRAEE VQKEELARIR NELSQLRSET EEKTKEIVQD KQVKSWWRFW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1oedB
Description:	Acetylcholine receptor protein, beta chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits