YRC Public Data Repository - Protein Structure Prediction

Protein:	YIP1
Organism:	Saccharomyces cerevisiae
Length:	248 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIP1.

Description	E-value	Query Range	Subject Range
YIP1_YEAST - Protein transport protein YIP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP1 PE=1... YIP1 - Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; intera...	2.0E-70	[1..248]	[1..248]
YIPF7_MOUSE - Protein YIPF7 OS=Mus musculus GN=Yipf7 PE=2 SV=1	1.0E-62	[5..247]	[26..254]
YIP1_SCHPO - Protein transport protein yip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yip1 PE=3 S... SPCC61.04c - Rab GTPase binding	2.0E-57	[1..247]	[1..225]
gi\|15231678, gi\|... - gi\|7669950\|emb\|CAB89237.1\| putative protein [Arabidopsis thaliana], gi\|15231678\|ref\|NP_190844.1\| int...	9.0E-50	[7..247]	[18..257]
CE14456 - WBGene00012208 Yeast YIP1 protein like status:Partially_confirmed TR:O02335 protein_id:CAB03470.1	7.0E-47	[70..246]	[109..279]
gi\|114576891 - gi\|114576891\|ref\|XP_001164632.1\| PREDICTED: similar to Yip1 domain family, member 4 isoform 3 [Pan t... gi\|117645860 - gi\|117645860\|emb\|CAL38397.1\| hypothetical protein [synthetic construct] YIPF4 - Yip1 domain family, member 4	4.0E-44	[19..241]	[6..237]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFYNTSNNA NNGGGFYQPS AQFAVPQGSM SFQNTVGSSN TGNDNNLGVA PDPLPVGILH  60
   61 ALSTKGYPHE PPLLEEIGIN FDHIITKTKM VLIPIRFGSG VPQEILN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSDLAGPLIF FLLFGLFLLM AGKVHFGYIY GVALFGTISL HNLSKLMSNN DTSTQTNLQF  60
   61 FNTASILGYC FLPLCFLSLL GIFHGLNNTT GYVVSVLFVI WSTWTSSGFL NSLLQLQNAR 120
  121 LLIAYPLLIF YSVFALMVIF V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits