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View Structure Prediction Details

Protein: YGR160W
Organism: Saccharomyces cerevisiae
Length: 203 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR160W.

Description E-value Query
Range
Subject
Range
UBP19_ARATH - Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2
9.0E-40 [54..182] [476..610]
gi|11177505 - gi|11177505|gb|AAG32307.1|AF284694_2 acetyl-CoA carboxylase subunit [Carpobrotus chilensis]
3.0E-38 [42..170] [50..173]
gi|1945333 - gi|1945333|emb|CAA97181.1| unnamed protein product [Saccharomyces cerevisiae]
2.0E-13 [8..55] [1..48]
gi|6678441, gi|1... - gi|6678441|ref|NP_033457.1| SH2 domain binding protein 1 (tetratricopeptide repeat containing) [Mus ...
2.0E-5 [42..166] [1040..1160]
CE06113 - DNA ligase like domain status:Confirmed UniProt:Q21275 protein_id:CAA94896.1
7.0E-5 [75..165] [344..440]
SCA2_RICCN - Putative surface cell antigen sca2 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=sca2 PE=...
SCA2_RICCN - Putative surface cell antigen sca2 OS=Rickettsia conorii GN=sca2 PE=3 SV=1
3.0E-4 [56..173] [1329..1444]
gi|17944386 - gi|17944386|gb|AAL48084.1| RE71565p [Drosophila melanogaster]
4.0E-4 [87..156] [273..341]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPPMCSNSF FNHSSSIDHD SLPTKIVAGS SVSSFFCFLL EDSSSSSSSA SSDLRFLSLD  60
   61 SSFSLSLSED EDEDESELED SFDSSFLVSS FSSSSSSSEE ESEEEEEESL DSSFLVSASL 120
  121 SLSEDDEEED SESEDEDEDE DSDSDSDSDS DSDEDEDEDE DSEEEEETAL AFSSLACLEA 180
  181 LTSFLLPFTL VVLAILFYPA WVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle