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View Structure Prediction Details

Protein: NSR1
Organism: Saccharomyces cerevisiae
Length: 414 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSR1.

Description E-value Query
Range		 Subject
Range
PABPC4 - poly(A) binding protein, cytoplasmic 4 (inducible form)
 0.0 [20..410] [35..441]
PABP1_MOUSE - Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
 0.0 [20..410] [35..441]
PABP1_RAT - Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1
 0.0 [20..410] [35..441]
gi|2665654 - gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
 0.0 [20..406] [35..440]
gi|19526272 - gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
 0.0 [20..411] [35..426]
gi|7673355 - gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
 0.0 [20..407] [51..461]
PABP8_ARATH - Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1
 0.0 [14..407] [63..478]
gi|64970 - gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
 0.0 [20..399] [35..434]

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Predicted Domain #1
Region A:
Residues: [1-158] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTTKVKGN KKEVKASKQA KEEKAKAVSS SSSESSSSSS SSSESESESE SESESSSSSS  60
   61 SSDSESSSSS SSDSESEAET KKEESKDSSS SSSDSSSDEE EEEEKEETKK EESKESSSSD 120
  121 SSSSSSSDSE SEKEESNDKK RKSEDAEEEE DEESSNKK

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.46
Match: 1ldvA
Description: No description for 1ldvA was found.

Predicted Domain #2
Region A:
Residues: [159-246] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKNEETEEPA TIFVGRLSWS IDDEWLKKEF EHIGGVIGAR VIYERGTDRS RGYGYVDFEN  60
   61 KSYAEKAIQE MQGKEIDGRP INCDMSTS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 189.156545
Match: 1cvjA_
Description: Poly(A)-binding protein
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [247-414] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPAGNNDRAK KFGDTPSEPS DTLFLGNLSF NADRDAIFEL FAKHGEVVSV RIPTHPETEQ  60
   61 PKGFGYVQFS NMEDAKKALD ALQGEYIDNR PVRLDFSSPR PNNDGGRGGS RGFGGRGGGR 120
  121 GGNRGFGGRG GARGGRGGFR PSGSGANTAP LGRSRNTASF AGSKKTFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 189.156545
Match: 1cvjA_
Description: Poly(A)-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.925882442647253 bayes_pls_golite062009
nucleic acid binding 0.412705465356557 bayes_pls_golite062009
RNA binding 0.0622892880461364 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle