YRC Public Data Repository - Protein Structure Prediction

Protein:	YGR149W
Organism:	Saccharomyces cerevisiae
Length:	432 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR149W.

Description	E-value	Query Range	Subject Range
gi\|85102875 - gi\|85102875\|ref\|XP_961410.1\| hypothetical protein NCU01324 [Neurospora crassa OR74A] gi\|32412674, gi\|... - gi\|32412674\|ref\|XP_326817.1\| hypothetical protein ( (AL451017) conserved hypothetical protein [Neuro...	498.0	[0..81]	[397..155]
gi\|116206610, gi... - gi\|88183195\|gb\|EAQ90663.1\| hypothetical protein CHGG_02598 [Chaetomium globosum CBS 148.51], gi\|1162...	456.0	[0..51]	[397..135]
gi\|46110054, gi\|... - gi\|46110054\|ref\|XP_382085.1\| hypothetical protein FG01909.1 [Gibberella zeae PH-1], gi\|42545824\|gb\|E...	444.0	[0..51]	[408..128]
gi\|39978017, gi\|... - gi\|39978017\|ref\|XP_370396.1\| hypothetical protein MGG_06893 [Magnaporthe grisea 70-15], gb\|EAA55236....	436.0	[0..81]	[391..156]
SPBC776.05 - membrane transporter YG75_SCHPO - Uncharacterized membrane protein C776.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S...	428.0	[0..60]	[388..52]
gi\|111071104 - gi\|111071104\|gb\|EAT92224.1\| hypothetical protein SNOG_00729 [Phaeosphaeria nodorum SN15]	404.0	[0..81]	[391..174]
gi\|119177296, gi... - gi\|90299226\|gb\|EAS28857.1\| hypothetical protein CIMG_07603 [Coccidioides immitis RS], gi\|119177296\|r...	402.0	[0..81]	[403..136]
gi\|169767816 - gi\|169767816\|ref\|XP_001818379.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766234 - gi\|83766234\|dbj\|BAE56377.1\| unnamed protein product [Aspergillus oryzae] gi\|238484727, gi... - gi\|238484727\|ref\|XP_002373602.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22...	394.0	[0..81]	[407..125]
gi\|15238520, gi\|... - gi\|9758147\|dbj\|BAB08704.1\| unnamed protein product [Arabidopsis thaliana], gi\|27764924\|gb\|AAO23583.1...	392.0	[0..112]	[394..66]
gi\|66852427, gi\|... - gi\|71000146\|ref\|XP_754790.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668524... gi\|159127799 - gi\|159127799\|gb\|EDP52914.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	392.0	[0..81]	[432..173]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKLDNNDID DETNNSVSLT SLLEFLDPIA SKVVSKYYHG SHLSKAEQKL RNFEGFRRRK  60
   61 PHHEHDSHHP HHLNRSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.603	a.118.8	TPR-like
View	Download	0.519	a.118.8	TPR-like
View	Download	0.519	a.118.8	TPR-like
View	Download	0.517	a.64.2	Bacteriocin AS-48
View	Download	0.514	a.64.2	Bacteriocin AS-48
View	Download	0.506	a.283.1	Description not found.
View	Download	0.503	a.50.1	Anaphylotoxins (complement system)
View	Download	0.475	a.64.2	Bacteriocin AS-48

Predicted Domain #2

Region A:
Residues: [78-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFLQLEDFKV RALQRIRNLD KPLDSIFFKN SSRLEKAFYP FTLFNIFFIG FLMGRFPEWF  60
   61 HVYYTILFFV LMPIRFYTYY KTKNHYFLAD FCYFVNMLCL LFIWIFPYSY SLFQSCFAFT 120
  121 FGTLCFAVIT WRNSLVIHSI DKTTSCFIHI IPPCVMYVIY HGLPLEYKIE RFPGAIIQSE 180
  181 LDIKKNILWT SLYYLVWQSL YHYFITLKKS SKIKSGERMT SFEYLTTHQF KNFWAVKLRS 240
  241 PWPMIIYTLS QYFYQLFTML LCGIWIRYKL AAALFLTIVF LWASHNGATY YIDHYGKNFE 300
  301 KEVDRLRLEV ENLQQKLQPD SDAVISDASV NDKDYLNVNR DEDFDDSSSV SSKSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits