| Protein: | VPS62 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 467 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS62.
| Description | E-value | Query Range |
Subject Range |
|
|
742.0 | [0..18] | [466..9] |
|
|
507.0 | [0..81] | [467..60] |
|
|
490.0 | [0..64] | [467..55] |
|
|
467.0 | [0..61] | [467..30] |
|
|
364.0 | [0..67] | [390..1021] |
|
|
349.0 | [0..58] | [467..50] |
|
|
338.0 | [0..37] | [461..39] |
|
Region A: Residues: [1-361] |
1 11 21 31 41 51
| | | | | |
1 MRISKNSHKR QRTRLYFLVT FIIYSIIPCR AVLVPWLDDD PFEATLLEMG DEPWSKDILS 60
61 STPPLHPSEV TEDNKSLKQR GNVPQYVIDN SPLLHLYSEE KYWPADVKDF VKRFQLRDHS 120
121 GEKIINEHLR DLSDLQEYYS VELENGTWGR VSSEGTYMTS LDDFDKGPDW LLGEQPEYGT 180
181 GHIKKAPAVL FVVDKGNGWV DAFWFYFYPF NWGPYIMGSG PWGNHVGDWE HSLVRFYKGE 240
241 PQYLWMSAHG GGSAYKFEAI EKIKRLRRVD GKLTNEVIKK PLIFSARGTH AHYASVGQHA 300
301 HDVPFFFMPL SDFTDRGPLW DPSLNYYAYT VTVGEKMTPC GAEETKMGLE WLSFKGAWGD 360
361 K
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [362-467] |
1 11 21 31 41 51
| | | | | |
1 QLRPRDPRQK WCPFQWKYID GPKGPLFKNM ERVSLCQRFK WWNFWKGCPA RRYIKRGEGL 60
61 DAEKNDLVGD NCGILLYNIR PKWLRSILRF LTWRGSVCFI MDYFTG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.297 | a.7.15 | Description not found. |
| View | Download | 0.297 | a.24.18 | Description not found. |
| View | Download | 0.278 | a.24.4 | Hemerythrin |
| View | Download | 0.277 | a.158.1 | F-box domain |
| View | Download | 0.277 | a.158.1 | F-box domain |
| View | Download | 0.272 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.265 | a.158.1 | F-box domain |
| View | Download | 0.214 | a.24.9 | alpha-catenin/vinculin |
