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View Structure Prediction Details

Protein: CAF130
Organism: Saccharomyces cerevisiae
Length: 1122 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF130.

Description E-value Query
Range
Subject
Range
CAF130 - Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in control...
CF130_YEAST - Protein CAF130 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAF130 PE=1 SV=1
0.0 [1..1122] [1..1122]

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Predicted Domain #1
Region A:
Residues: [1-1122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKKAATNY AERQNLASED SSGDSVHFKD FIPLQELLKD KNYVPSVENL EKILYNETMF  60
   61 NDQKICSNLL LEALIITLFT TISGKSALRL IQTSSLKERK SWAQSFENNS SSYASIVLSW 120
  121 KDNDILLLKF LRFLLANKTA PLQINRYNLP EYKLPLSFLI VSKITIPSIL LNETYNLLKD 180
  181 YLYSITGRIE SLISCSSTFD KPALVVRKIL KDYNRMIECR NFYFWYSFNA ENRVNLTFSD 240
  241 NISLLMENDE GNAGSGLDDS RFDHQKQPRE AIMGRTINDQ EQIYSFELNQ DGTLEIPNVM 300
  301 EHSLLRHELL FKILNLTTVL TPLLELQFST LCGLVDPLMQ PTPNDKHIIS IDFLFQLFLG 360
  361 LMSQSIKTSQ EHNDHYDWKF YMCFNMQKII DATMLRLNCF DFDILNSVNN TDNAVHWKTQ 420
  421 LHRWLPHGLN TQDLELLYMI DILAVYTIYK LYEKIPIQLN PFLFSLISLW KNLSCVILLA 480
  481 LEIDRIEEEN GTYETPLMVR ATIRGAAALR SVIATVLNGL VKNNDHDFKH ESLNTFMSPY 540
  541 GRKLCHGALY ADLRSHTASL LALGASIEDV TDLFADLQSG DRFDEDIRYM FDYECEDYDE 600
  601 SFSESDHGGL DESVVNPTEK IASGSNNVFF RRRCNCIFND DKLVAEDGAN EAFGSTNSEN 660
  661 VEGAMHNNRN AVHNATTATS DHVVTSPNPL SVRSRSTFEF DYSGEDWRDV PRDFNMYYSP 720
  721 SYSFIHEPKL DVIFSLTLRG ATEKLNKEES ILLVRSVASC VRNEQDQMIL ADLESNFSAS 780
  781 INGDVEGEGN TKMSKIDNED LRRTTPDDIY EIWSEESAFE RMLNVNHDVA WRLMDEMLMC 840
  841 TGYRRILIWF LTHLELKHSL IYYVFELIMG LRGKPFSGEA SDQDKKDDMI YEILKKKQKN 900
  901 EDASGLPFSR QGPIVLSDIE TKMLLQEFFM NAAIFLSSKN NEEENEDGEK ISLYSLGLVR 960
  961 LICYMVQTLI ANDKFFFTKS ECTFELQTLL MTWIGILPEA KDLFFKIKTR LAMEEEDSAD1020
 1021 TMQHEGRKNS DIEKKLNAKP ASELNLKLLN LFPSKPANKD DSSPINTLRS FIADYSFDTQ1080
 1081 VNPPGRRVVF YDGKILPLPK ADKPIPLHEY ITLAELDVGD SE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle