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View Structure Prediction Details

Protein: SYF2
Organism: Saccharomyces cerevisiae
Length: 215 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYF2.

Description E-value Query
Range
Subject
Range
gi|151943409 - gi|151943409|gb|EDN61720.1| conserved protein [Saccharomyces cerevisiae YJM789]
SYF2 - Member of the NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms...
gi|190406853 - gi|190406853|gb|EDV10120.1| hypothetical protein SCRG_00889 [Saccharomyces cerevisiae RM11-1a]
gi|207345085 - gi|207345085|gb|EDZ72022.1| YGR129Wp-like protein [Saccharomyces cerevisiae AWRI1631]
SYF2_YEAST - Pre-mRNA-splicing factor SYF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYF2 PE=1 ...
1.0E-93 [1..215] [1..215]

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Predicted Domain #1
Region A:
Residues: [1-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFYKLDEKL KELKRKRVDV SIKSRKLADR EIQEVSANRK PRVYSMEDVN DADESVGDTE  60
   61 SPEKEKAFHY TVQEYDAWER RHPQGKTGQS QRGGISYDQL AKLSYEKTLR NLATQTQNSS 120
  121 KQDSSADEED NKNVPKKGRI GKVQKDTKTG KITIADDDKL VNKLAVSLQS ESKKRYEARK 180
  181 RQMQNAKTLY GVESFINDKN KQFNEKLSRE SKGSE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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