YRC Public Data Repository - Protein Structure Prediction

Protein:	YGR127W
Organism:	Saccharomyces cerevisiae
Length:	312 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR127W.

Description	E-value	Query Range	Subject Range
YG37_YEAST - Uncharacterized protein YGR127W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR127W ... gi\|190406855 - gi\|190406855\|gb\|EDV10122.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YGR127W - Putative protein of unknown function; expression is regulated by Msn2p/Msn4p, indicating a possible ...	0.0	[1..312]	[1..312]
TNG2_MOUSE - Transport and Golgi organization 2 homolog OS=Mus musculus GN=Tango2 PE=1 SV=1	5.0E-81	[1..312]	[1..274]
gi\|16553179 - gi\|16553179\|dbj\|BAB71498.1\| unnamed protein product [Homo sapiens]	4.0E-79	[12..312]	[22..271]
gi\|18420207 - gi\|18420207\|ref\|NP_568038.1\| unknown protein [Arabidopsis thaliana]	2.0E-75	[1..312]	[1..269]
gi\|9634740, gi\|7... - gi\|9634740\|ref\|NP_039033.1\| T10 gene product [Fowlpox virus], gi\|7271568\|gb\|AAF44414.1\|AF198100_61 O...	1.0E-71	[1..312]	[1..271]
CE12870 - status:Confirmed UniProt:Q22009 protein_id:CAB01439.1	1.0E-70	[1..312]	[1..273]
gi\|17428797 - gi\|17428797\|emb\|CAD15482.1\| putative signal peptide protein [Ralstonia solanacearum GMI1000] gi\|17546499 - gi\|17546499\|ref\|NP_519901.1\| putative signal peptide protein [Ralstonia solanacearum GMI1000]	6.0E-63	[1..286]	[1..247]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCILMATRAH PDYELILISN RDEFLARKTH ATCWHNNDFI LSPYDLAKTS AEKQIFGTWS  60
   61 GINKEGKLAT ILNLKLDNEQ NNTKSRSRGL LPFIFLSIHK ADFEDWDNYK KFEGHYDGLK 120
  121 STGDFNFFYG DVIKKQYKVI DSLGRTFDVL SSTCRKDLDS YMVVSNGKFY DSSSIPGQAW 180
  181 EKVKVARDSL ENLVLENIES DEEKIISSCF QLASKSSLPS TISNPDVLQM VDPNVTMNTI 240
  241 YVPPLRRPPR DDLGASIPDG DYYGTRSQIV LLVSKDSTRV TFIERVLYSS DEDVRKYSVT 300
  301 SPKEEKRFKF KL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits