| Protein: | YGR125W |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1036 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR125W.
| Description | E-value | Query Range |
Subject Range |
|
|
651.0 | [0..84] | [1026..35] |
|
|
560.0 | [0..24] | [1036..39] |
|
|
485.0 | [0..136] | [787..22] |
|
|
482.0 | [0..151] | [784..41] |
|
|
474.0 | [0..173] | [784..62] |
|
|
474.0 | [0..173] | [784..62] |
|
|
472.0 | [0..173] | [784..62] |
|
|
469.0 | [0..121] | [785..1] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MGRTIRRRRS NSSLSEAISV SLGINQDSSV NKMHRASVSA MSPPLCRSYM SGFFTGGNSP 60
61 MINNLSDSKL PISNKQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.614 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.583 | a.77.1 | DEATH domain |
| View | Download | 0.538 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.500 | a.28.1 | ACP-like |
| View | Download | 0.476 | a.28.1 | ACP-like |
| View | Download | 0.449 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.416 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.409 | a.77.1 | DEATH domain |
| View | Download | 0.394 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
|
Region A: Residues: [77-202] |
1 11 21 31 41 51
| | | | | |
1 HPKVIHGSEN LHRQTAQLSN EFCSSSVEEN SPTIKDYMDI IGNGDRKDDQ SMRTIEENID 60
61 EEYSDEYSRL LLSPASSNVD DDRNRGLQNS SLPELEDGYA GGYQSLRPSH NLRFRPRNLW 120
121 HMCTSF
|
| Detection Method: | |
| Confidence: | 6.154902 |
| Match: | 1hynP |
| Description: | Erythrocite membrane Band 3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [203-524] |
1 11 21 31 41 51
| | | | | |
1 PSKFAHYLPA AVLGLLLNIL DALSYGMIIF PITEPVFSHL GPTGISMFYI STIISQAVYS 60
61 GGWSSFPSGI GSEMIEITPF YHTMALAIKE ALAGNDDEII TTTIFCYVIS SMLTGVVFYA 120
121 LGKLRLGKIV GFFPRHILIG CIGGVGYFLI ITGIEVTTRV AKFEYSWPFF SGLFTDYDTL 180
181 AKWLLPVLLT VVLIGTQRYF KNSLVLPSFY ILTLVLFHFI VAIIPTLSLD ALRQAGWIFP 240
241 IANSDSKWYD HYRLFNVHKV HWSLVLQQIP TMMALTFFGI LHVPINVPAL AMSLQMDKYD 300
301 VDRELIAHGY SNFFSGLLGS VQ
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 2yxqA |
| Description: | No description for 2yxqA was found. |
|
Region A: Residues: [525-644] |
1 11 21 31 41 51
| | | | | |
1 NYLVYTNSVL FIRAGADSPF AGFLLIALTI CIMIIGPVII SFIPICIVGS LIFLLGYELL 60
61 VEALVDTWNK LNRFEYLTVV IIVFTMGIFD FVLGIIVGIL IACFSFLVDS TKLQTINGEY 120
121
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [645-766] |
1 11 21 31 41 51
| | | | | |
1 NGNVARSTVY RDYVQTKFLD GIGEQIYVLK LQNLLFFGTI ISIEEKIERL LQISNKDATK 60
61 RRIKYLILDF KNINADNIDY SAAEGFNRIK RFTETKRIKL IISSIKERDR IYNAFNNVGL 120
121 LN
|
| Detection Method: | |
| Confidence: | 5.154902 |
| Match: | 1sboA |
| Description: | Solution Structure of putative anti sigma factor antagonist from Thermotoga maritima (TM1442) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [767-880] |
1 11 21 31 41 51
| | | | | |
1 DVELFADLNS ALEWCENEFL FQYKQLRKKA KERLEEGKQN NVVSAVIAAT KNKKIDTIGN 60
61 GLNRGSNGDT ARNLMSLPTN TPRNYQILSV AQNVFVNDEQ AVKNFKKEYK DDEP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [881-1036] |
1 11 21 31 41 51
| | | | | |
1 VLPILLFALK QYRPDIISEV QKVREKEIKF WAQLCPYFTR RRLASQSHLL HADNIFFLVE 60
61 TGMLKATYEL PQGTLYEIFS NGTCFGKIIA PGNAMPREQK LTIETETDSV LWVIDSSSLN 120
121 KLKEDNLALY VEVALMVMCI KDTRFKELLG YTLVSA
|
| Detection Method: | |
| Confidence: | 4.28 |
| Match: | 2pqqA |
| Description: | No description for 2pqqA was found. |
