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View Structure Prediction Details

Protein: DAM1
Organism: Saccharomyces cerevisiae
Length: 343 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAM1.

Description E-value Query
Range
Subject
Range
DAM1 - Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced...
gi|151943394 - gi|151943394|gb|EDN61705.1| duo1 and dam1 interacting protein [Saccharomyces cerevisiae YJM789]
gi|190406868 - gi|190406868|gb|EDV10135.1| DASH complex subunit DAM1 [Saccharomyces cerevisiae RM11-1a]
DAM1_YEAST - DASH complex subunit DAM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAM1 PE=1 SV=2
0.0 [1..343] [1..343]
gi|15219566, gi|... - gi|4204314|gb|AAD10695.1| Hypothetical protein [Arabidopsis thaliana], pir||H86168 hypothetical prot...
0.009 [30..260] [723..963]

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Predicted Domain #1
Region A:
Residues: [1-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDKAKLGT TRSATEYRLS IGSAPTSRRS SMGESSSLMK FADQEGLTSS VGEYNENTIQ  60
   61 QLLLPKIREL SDSIITLDSN FTRLNFIHES LADLNESLGS LLYGIMSNSW CVEFSQAPHD 120
  121 IQDDLIAIKQ LKSLEDEKNN LVMELSNMER GIKRKKDEQG ENDLAKASQN KQFNQPLFPS 180
  181 SQVRKYRSYD NRDKRKPSKI GNNLQVENEE DYEDDTSSEA SFVLNPTNIG MSKSSQGHVT 240
  241 KTTRLNNNTN SKLRRKSILH TIRNSIASGA DLPIENDNVV NLGDLHPNNR ISLGSGAARV 300
  301 VNGPVTKNRN SMFSGRAERK PTESRHSVAK KTEKKINTRP PFR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle