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View Structure Prediction Details

Protein: YGR109W-A
Organism: Saccharomyces cerevisiae
Length: 290 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR109W-A.

Description E-value Query
Range
Subject
Range
YGR109W-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
583.0 [0..1] [284..1]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFMDQIPGG GNYPKLPVEC LPNFPIQPSL TFRGRNDSHK LKNFISEIML NMSMISWPND  60
   61 ASRIVYCRRH LLNPAAQWAN DFVQEQGILE ITFDTFIQGL YQHFYKPPDI NKIFNAITQL 120
  121 SEAKLGIERL NQRFRKIWDR MPPDFMTEKA AIMTYTRLLT KETYNIVRMH KPETLKDAME 180
  181 EAYQTTALTE RF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [193-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPGFELDADG DTIIGATTHL QEEYDSDYDS EDNLTQNGYV HTVRTRRSYN KPMSNHRNRR  60
   61 NNNPSREECI KNRLCFYCKK EGHRLNECRA RKASSNRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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