YRC Public Data Repository - Protein Structure Prediction

Protein:	VMA21
Organism:	Saccharomyces cerevisiae
Length:	77 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA21.

Description	E-value	Query Range	Subject Range
gi\|45269523 - gi\|45269523\|gb\|AAS56142.1\| YGR105W [Saccharomyces cerevisiae]	132.0	[0..1]	[77..1]
VMA21_ASHGO - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Ashbya gossypii (strain ATCC 10895 / CBS... VMA21_ASHGO - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Ashbya gossypii GN=VMA21 PE=3 SV=1	81.0	[0..1]	[76..1]
VMA21_YARLI - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Yarrowia lipolytica (strain CLIB 122 / E... VMA21_YARLI - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Yarrowia lipolytica GN=VMA21 PE=3 SV=1	77.0	[0..4]	[64..3]
VMA21_DEBHA - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Debaryomyces hansenii (strain ATCC 36239... VMA21_DEBHA - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Debaryomyces hansenii GN=VMA21 PE=3 SV=1	76.0	[0..1]	[75..1]
gi\|49642874, gi\|... - gi\|50307521\|ref\|XP_453740.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642874\|emb\|CAH0083...	66.0	[0..14]	[76..1]
VMA21_EMENI - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Emericella nidulans GN=vma21 PE=3 SV=1 gi\|49091302, gi\|... - gi\|67525035\|ref\|XP_660579.1\| hypothetical protein AN2975.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	63.0	[0..5]	[76..35]
VMA21_PHANO - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Phaeosphaeria nodorum GN=VMA21 PE=3 SV=1 VMA21_PHANO - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Phaeosphaeria nodorum (strain SN15 / ATC...	62.0	[0..5]	[76..34]
gi\|42547742, gi\|... - gi\|46108788\|ref\|XP_381452.1\| hypothetical protein FG01276.1 [Gibberella zeae PH-1], gi\|42547742\|gb\|E...	61.0	[0..5]	[76..30]
VMA21_NEUCR - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Neurospora crassa GN=vma-21 PE=3 SV=1 VMA21_NEUCR - Vacuolar ATPase assembly integral membrane protein vma-21 OS=Neurospora crassa (strain ATCC 24698 / ...	57.0	[0..5]	[69..36]
VMA21_CHAGB - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Chaetomium globosum (strain ATCC 6205 / ... VMA21_CHAGB - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Chaetomium globosum GN=VMA21 PE=3 SV=1	57.0	[0..1]	[69..32]

Back

Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDVPRAVI NKLMLFTAAM VVLPVLTFFI IQQFTPNTLI SGGLAAAMAN VVLIVYIVVA  60
   61 FREDTEDHKV DGNKKED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.283997
Match:	PF09446.1
Description:	No description for PF09446.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.879	N/A	N/A	a.2.18	Description not found.
View	Download	0.870	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.870	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.817	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.817	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.800	N/A	N/A	f.17.5	Description not found.
View	Download	0.783	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.783	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.781	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.769	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.767	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.637	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.458	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.448	N/A	N/A	a.37.1	A DNA-binding domain in eukaryotic transcription factors
View	Download	0.371	N/A	N/A	a.7.8	GAT domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits