YRC Public Data Repository - Protein Structure Prediction

Protein:	YGR102C
Organism:	Saccharomyces cerevisiae
Length:	183 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR102C.

Description	E-value	Query Range	Subject Range
gi\|45270540 - gi\|45270540\|gb\|AAS56651.1\| YGR102C [Saccharomyces cerevisiae]	390.0	[0..1]	[183..1]
GATF_KLULA - Glutamyl-tRNA(Gln) amidotransferase subunit F, mitochondrial OS=Kluyveromyces lactis (strain ATCC 85... gi\|49642871 - gi\|49642871\|emb\|CAH00833.1\| KLLA0D15246p [Kluyveromyces lactis]	139.0	[0..29]	[182..26]
gi\|49526010 - gi\|49526010\|emb\|CAG59629.1\| unnamed protein product [Candida glabrata] GATF_CANGA - Glutamyl-tRNA(Gln) amidotransferase subunit F, mitochondrial OS=Candida glabrata (strain ATCC 2001 /...	135.0	[0..29]	[183..16]
GATF_ASHGO - Glutamyl-tRNA(Gln) amidotransferase subunit F, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /... gi\|45184916, gi\|... - gi\|45184916\|ref\|NP_982634.1\| AAR093Cp [Ashbya gossypii ATCC 10895], gi\|44980525\|gb\|AAS50458.1\| AAR09...	108.0	[0..30]	[182..43]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKTWRLCRT HTVGGLCHDG SHRFVSTGGA KIGKKFENMN QIRDYLSRPV WSVHEYLGIN  60
   61 TKEEKLEPPS AEAVKKLLRL SGLPLEGADI KEIQMRLAKQ LSFINKLHNI PVEGEKHTKE 120
  121 YDARLVQRNT KQLNYTKLLE GISHQKQDAE LGEVSGSWKA TGLAAESKNA YFVVKEGLLK 180
  181 NRK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.29
Match:	2df4C
Description:	No description for 2df4C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits