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View Structure Prediction Details

Protein: PRP38
Organism: Saccharomyces cerevisiae
Length: 242 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP38.

Description E-value Query
Range
Subject
Range
PRP38 - Unique component of the U4/U6.U5 tri-snRNP particle, required for conformational changes which resul...
gi|207345167 - gi|207345167|gb|EDZ72075.1| YGR075Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190406905 - gi|190406905|gb|EDV10172.1| pre-mRNA splicing factor PRP38 [Saccharomyces cerevisiae RM11-1a]
PRP38_YEAST - Pre-mRNA-splicing factor 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP38 PE=1 S...
gi|151943352 - gi|151943352|gb|EDN61665.1| RNA splicing factor [Saccharomyces cerevisiae YJM789]
0.0 [1..242] [1..242]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNEFQVES NISPKQLNNQ SVSLVIPRLT RDKIHNSMYY KVNLSNESLR GNTMVELLKV  60
   61 MIGAFGTIKG QNGHLHMMVL GGIEFKCILM KLIEIRPNFQ QLNFLLNVKN ENGFDSKYII 120
  121 ALLLVYARLQ YYYLNGNNKN DDDENDLIKL FKVQLYKYSQ HYFKLKSFPL QVDCFAHSYN 180
  181 EELCIIHIDE LVDWLATQDH IWGIPLGKCQ WNKIYNSDEE SSSSESESNG DSEDDNDTSS 240
  241 ES

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 131.958607
Match: PF03371
Description: PRP38 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle