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View Structure Prediction Details

Protein: YGR067C
Organism: Saccharomyces cerevisiae
Length: 794 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR067C.

Description E-value Query
Range
Subject
Range
YGR067C - Putative protein of unknown function; contains a zinc finger motif similar to that of Adr1p
0.0 [1..794] [1..794]
gi|4507999, gi|8... - gi|881564|gb|AAA97578.1| ZNF157, gi|4507999|ref|NP_003437.1| zinc finger protein 157 [Homo sapiens],...
0.0 [4..322] [158..494]
ZN252_CANLF - Zinc finger protein 252 OS=Canis lupus familiaris GN=ZNF252 PE=2 SV=1
0.0 [2..348] [394..758]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGQKKYIC SFCLKPFSRS EHKIRHERSH AGVKPFQCQV CKHSFVRRDL LQRHIRTVHR  60
   61 TFLLSSYAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 120.36704
Match: 1lu6A_
Description: No description for 1lu6A_ was found.

Predicted Domain #2
Region A:
Residues: [70-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGDKADIPV SLGVGDVDST SPRDIKMETL VNSMIKVNSG LINIHYHSSN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 120.36704
Match: 1lu6A_
Description: No description for 1lu6A_ was found.

Predicted Domain #3
Region A:
Residues: [120-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEKMDKQQRC VIGKESSSLK KGKSRFKQVK SRLESSISVK ILQEYS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 109.09691
Match: 1meyC_
Description: Designed zinc finger protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [166-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDFISSRDIL TFFRMGVSHL VENKIFQNFF PDLFSSLQND ELVESFWINK PFGLIIACLG  60
   61 MSISLNQDSQ KLWFICCTNL YASSSKHDND FDTEDILSQT EQHDVFALIL FYSLLVMLEN 120
  121 NIPVSNSIKK FDVFSMLQDI LKPFTVASSS YHYLNSKENA WFIFDLWVNI LR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.228787
Match: 1ubdC_
Description: Ying-yang 1 (yy1, zinc finger domain)
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [338-794]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSNNFNNDSL LIFGWFVNQE FISSNPLKDF IYKGPSMSTT DLTLKHINIL ADSAYVYFII  60
   61 KKTYPQELPS DFRVHDLLVY LNECFVMQQP IKPETSANPS LFANVMNARI TDCKSKSNWL 120
  121 LWETIWFEFI NNLTLRNGTT RNIWFIDNFP QVSTSCLLHH SSSFVDETLI TTNLSIISML 180
  181 LNLKSFTLAS LNPRNIQLIT DIVSFQLKLF SSELIASSDV SPSQVSQLLV NPNVHLMLYF 240
  241 WFDTIYVQRQ SYLSSTEKEE FEKVEVFVND YIITHQKNLV TDLHSILFDF WSDSFIAYHI 300
  301 LLHAIVSSLR DNILYPYLIY SPHLNDQTKA LLTDISNWSC FALQQPFRKT SRGSLSGASD 360
  361 MKSFSVASCL PLSPNFLKRD SNCNKILLPP LDIKAIEPIS TSNYTYVNSA PKQQEKEQPL 420
  421 LRATGNNINL VQTIVVPPQV NMESQEFSAS STDNKQS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle