YRC Public Data Repository - Protein Structure Prediction

Protein:	SCM4
Organism:	Saccharomyces cerevisiae
Length:	187 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCM4.

Description	E-value	Query Range	Subject Range
ATG33 - Mitochondrial mitophagy-specific protein; required primarily for mitophagy induced at the post-log p... ATG33_YEAST - Autophagy-related protein 33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG33 PE=1 ...	194.0	[0..1]	[113..1]
gi\|49527723\|emb\|... - unnamed protein product [Candida glabrata CBS 138] gi\|50291957, gi\|... - gi\|50291957\|ref\|XP_448411.1\| unnamed protein product [Candida glabrata], gi\|49527723\|emb\|CAG61372.1\|...	141.0	[0..8]	[187..10]
gi\|45190323, gi\|... - gi\|45190323\|ref\|NP_984577.1\| AEL283Cp [Ashbya gossypii ATCC 10895], gi\|44983219\|gb\|AAS52401.1\| AEL28... gi\|44983219 - gi\|44983219\|gb\|AAS52401.1\| AEL283Cp [Ashbya gossypii ATCC 10895]	66.0	[0..1]	[90..1]
gi\|49640250 - gi\|49640250\|emb\|CAH02707.1\| KLLA0A02695p [Kluyveromyces lactis] gi\|50302369, gi\|... - gi\|50302369\|ref\|XP_451119.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640250\|emb\|CAH0270...	57.0	[0..1]	[91..1]
gi\|42545742, gi\|... - gi\|46107332\|ref\|XP_380725.1\| hypothetical protein FG00549.1 [Gibberella zeae PH-1], gi\|42545742\|gb\|E...	46.0	[0..4]	[91..7]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVSPAIVKG IAVSSLGLYA GILTSSTVIS ITTPINVLTQ HLKNVLCTLG CWSTVLGGLA  60
   61 TGAFGLSYYL AAPGERPNYL LCGLGVAPLS AAYLYLVSLF NHKLAPKCTR DQNDLEKQKD 120
  121 EKLPQHHPEV KDGEAACPFS KMNNAKTLKP ESERSVKCHS YMSLHMSIVT GITIFTFGKC 180
  181 ILDGFKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits