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View Structure Prediction Details

Protein: VMA7
Organism: Saccharomyces cerevisiae
Length: 118 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA7.

Description E-value Query
Range
Subject
Range
VATF_YEAST - V-type proton ATPase subunit F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA7 PE=1...
gi|151943305 - gi|151943305|gb|EDN61618.1| V-ATPase V1 sector subunit F [Saccharomyces cerevisiae YJM789]
VMA7 - Subunit F of the eight-subunit V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase), an el...
gi|190406952 - gi|190406952|gb|EDV10219.1| vacuolar ATP synthase subunit F [Saccharomyces cerevisiae RM11-1a]
3.0E-38 [1..118] [1..118]
gi|194193659, gi... - gi|195583692|ref|XP_002081650.1| GD25605 [Drosophila simulans], gi|194193659|gb|EDX07235.1| GD25605 ...
gi|195488498, gi... - gi|195488498|ref|XP_002092341.1| GE14140 [Drosophila yakuba], gi|194178442|gb|EDW92053.1| GE14140 [D...
gi|194125972, gi... - gi|195334675|ref|XP_002034002.1| GM20126 [Drosophila sechellia], gi|194125972|gb|EDW48015.1| GM20126...
Vha14-PA - The gene Vacuolar H<sup>+</sup> ATPase 14kD subunit is referred to in FlyBase by the symbol Dmel\Vha...
gi|194882763, gi... - gi|194882763|ref|XP_001975480.1| GG22339 [Drosophila erecta], gi|190658667|gb|EDV55880.1| GG22339 [D...
4.0E-38 [2..116] [6..117]
VATF_NEUCR - V-type proton ATPase subunit F OS=Neurospora crassa GN=vma-7 PE=3 SV=1
VATF_NEUCR - V-type proton ATPase subunit F OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / D...
6.0E-38 [2..118] [8..124]
VATF_MOUSE - V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2
VATF_RAT - V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1
3.0E-36 [1..116] [1..113]
VATF_MANSE - V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1
1.0E-35 [2..116] [6..117]
gi|12834081 - gi|12834081|dbj|BAB22780.1| unnamed protein product [Mus musculus]
2.0E-35 [1..116] [1..113]
VATF_ANOGA - (Q17029) Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F ...
5.0E-35 [2..116] [6..117]
vha-9 - H+-transporting ATPase status:Confirmed UniProt:Q23680 protein_id:CAA88888.1
1.0E-34 [2..116] [4..115]
VATF_ARATH - V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1
3.0E-33 [2..116] [9..120]
VATF_BOVIN - (Q28029) Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F ...
3.0E-33 [10..116] [1..104]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKRTLIAV IADEDTTTGL LLAGIGQITP ETQEKNFFVY QEGKTTKEEI TDKFNHFTEE  60
   61 RDDIAILLIN QHIAENIRAR VDSFTNAFPA ILEIPSKDHP YDPEKDSVLK RVRKLFGE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 34.886057
Match: PF01990
Description: ATP synthase (F/14-kDa) subunit

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle