YRC Public Data Repository - Protein Structure Prediction

Protein:	VMA7
Organism:	Saccharomyces cerevisiae
Length:	118 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA7.

Description	E-value	Query Range	Subject Range
VATF_YEAST - V-type proton ATPase subunit F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA7 PE=1... gi\|151943305 - gi\|151943305\|gb\|EDN61618.1\| V-ATPase V1 sector subunit F [Saccharomyces cerevisiae YJM789] VMA7 - Subunit F of the eight-subunit V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase), an el... gi\|190406952 - gi\|190406952\|gb\|EDV10219.1\| vacuolar ATP synthase subunit F [Saccharomyces cerevisiae RM11-1a]	3.0E-38	[1..118]	[1..118]
gi\|194193659, gi... - gi\|195583692\|ref\|XP_002081650.1\| GD25605 [Drosophila simulans], gi\|194193659\|gb\|EDX07235.1\| GD25605 ... gi\|195488498, gi... - gi\|195488498\|ref\|XP_002092341.1\| GE14140 [Drosophila yakuba], gi\|194178442\|gb\|EDW92053.1\| GE14140 [D... gi\|194125972, gi... - gi\|195334675\|ref\|XP_002034002.1\| GM20126 [Drosophila sechellia], gi\|194125972\|gb\|EDW48015.1\| GM20126... Vha14-PA - The gene Vacuolar H<sup>+</sup> ATPase 14kD subunit is referred to in FlyBase by the symbol Dmel\Vha... gi\|194882763, gi... - gi\|194882763\|ref\|XP_001975480.1\| GG22339 [Drosophila erecta], gi\|190658667\|gb\|EDV55880.1\| GG22339 [D...	4.0E-38	[2..116]	[6..117]
VATF_NEUCR - V-type proton ATPase subunit F OS=Neurospora crassa GN=vma-7 PE=3 SV=1 VATF_NEUCR - V-type proton ATPase subunit F OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / D...	6.0E-38	[2..118]	[8..124]
VATF_MOUSE - V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2 VATF_RAT - V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1	3.0E-36	[1..116]	[1..113]
VATF_MANSE - V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1	1.0E-35	[2..116]	[6..117]
gi\|12834081 - gi\|12834081\|dbj\|BAB22780.1\| unnamed protein product [Mus musculus]	2.0E-35	[1..116]	[1..113]
VATF_ANOGA - (Q17029) Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F ...	5.0E-35	[2..116]	[6..117]
vha-9 - H+-transporting ATPase status:Confirmed UniProt:Q23680 protein_id:CAA88888.1	1.0E-34	[2..116]	[4..115]
VATF_ARATH - V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1	3.0E-33	[2..116]	[9..120]
VATF_BOVIN - (Q28029) Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F ...	3.0E-33	[10..116]	[1..104]

Back

Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKRTLIAV IADEDTTTGL LLAGIGQITP ETQEKNFFVY QEGKTTKEEI TDKFNHFTEE  60
   61 RDDIAILLIN QHIAENIRAR VDSFTNAFPA ILEIPSKDHP YDPEKDSVLK RVRKLFGE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.886057
Match:	PF01990
Description:	ATP synthase (F/14-kDa) subunit

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits