YRC Public Data Repository - Protein Structure Prediction

Protein:	YPS5
Organism:	Saccharomyces cerevisiae
Length:	165 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPS5.

Description	E-value	Query Range	Subject Range
PEPA_CANLF - Pepsin A OS=Canis lupus familiaris GN=PGA PE=2 SV=1	7.0E-43	[1..164]	[1..157]
gi\|57164359, gi\|... - gi\|57164359\|ref\|NP_001009356.1\| pregnancy-associated glycoprotein 9 [Ovis aries], gi\|2055445\|gb\|AAB5...	9.0E-43	[1..164]	[1..153]
gi\|28603728, gi\|... - gi\|6224889\|gb\|AAF05999.1\|AF192333_1 pregnancy-associated glycoprotein-16 [Bos taurus], gi\|28603728\|r...	1.0E-42	[1..164]	[1..154]
gi\|6180005 - gi\|6180005\|gb\|AAF05749.1\|AF191335_1 pregnancy-associated glycoprotein-10 [Capra hircus]	1.0E-41	[1..164]	[1..153]
gi\|2689727, gi\|5... - gi\|57619120\|ref\|NP_001009868.1\| pregnancy-associated glycoprotein [Felis catus], gi\|2689727\|gb\|AAB91...	2.0E-41	[1..162]	[1..156]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFSILSLL SSLMCSLTVL GSSASSYVKF PVQKFADIIN IGTQDVSTVF KRNEVLNTTV  60
   61 INGIGVYVVK MEIGTPPQTV YLQLDTGSSD MIVNNADIAY CKSMSDGSDY ASTDNYELTA 120
  121 TFTGPRSTTT SPELITLSAL IGVNSMQETH LLLRITRLSS MTYTY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.035458
Match:	1ypsA_
Description:	No description for 1ypsA_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits