YRC Public Data Repository - Protein Structure Prediction

Protein:	YGL258W-A
Organism:	Saccharomyces cerevisiae
Length:	77 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGL258W-A.

Description	E-value	Query Range	Subject Range
PAG_HORSE - Pregnancy-associated glycoprotein OS=Equus caballus GN=PAG PE=2 SV=1	4.0E-27	[2..74]	[199..270]
gi\|2689725 - gi\|2689725\|gb\|AAB91421.1\| pregnancy-associated glycoprotein [Equus zebra]	1.0E-26	[2..74]	[199..270]
PEPA_SORUN - Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1	1.0E-26	[2..74]	[200..271]
gi\|1246039 - gi\|1246039\|gb\|AAB35843.1\| pepsinogen 2 [tuna, Peptide, 360 aa]	2.0E-26	[2..74]	[177..248]
gi\|6224893, gi\|2... - gi\|6224893\|gb\|AAF06001.1\|AF192335_1 pregnancy-associated glycoprotein-18 [Bos taurus], gi\|28603730\|r...	3.0E-26	[2..74]	[194..265]
PEPA1_RABIT - Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1	4.0E-26	[2..74]	[200..271]
gi\|2689727, gi\|5... - gi\|57619120\|ref\|NP_001009868.1\| pregnancy-associated glycoprotein [Felis catus], gi\|2689727\|gb\|AAB91...	7.0E-26	[2..74]	[200..271]
PEPA_SUNMU - Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2	1.0E-25	[2..74]	[200..271]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFERQGKIE KKISYSLFLN GPNVHFGSIL FGAVDKSKYA EELCTHPMRQ AYNTLDSNSR  60
   61 IIITVQSVAI LDGKLVW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.927757
Match:	1eagA_
Description:	Acid protease
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits