YRC Public Data Repository - Protein Structure Prediction

Protein:	BRR6
Organism:	Saccharomyces cerevisiae
Length:	197 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRR6.

Description	E-value	Query Range	Subject Range
BRL1 - Essential nuclear envelope integral membrane protein identified as a suppressor of a conditional mut... BRL1_YEAST - Nucleus export protein BRL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRL1 PE=1 SV...	210.0	[0..47]	[183..294]
BRR6_SCHPO - Nucleus export protein brr6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brr6 PE=1 SV=1 SPAC8F11.06 - nuclear envelope protein	203.0	[0..44]	[183..116]
gi\|66820941, gi\|... - gi\|66820941\|ref\|XP_644013.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60472297\|gb\|EAL... gi\|60472297 - gi\|60472297\|gb\|EAL70250.1\| hypothetical protein DDB0203260 [Dictyostelium discoideum]	164.0	[0..46]	[164..255]
gi\|28828405 - gi\|28828405\|gb\|AAO51033.1\| hypothetical protein [Dictyostelium discoideum]	164.0	[0..46]	[164..255]
gi\|19173629, gi\|... - gi\|19173629\|ref\|NP_597432.1\| similarity to HYPOTHETICAL PROTEIN YGZ7_YEAST [Encephalitozoon cuniculi... gi\|19173629 - gi\|19173629\|ref\|NP_597432.1\| similarity to HYPOTHETICAL PROTEIN YGZ7_YEAST [Encephalitozoon cuniculi...	163.0	[0..44]	[164..76]
gi\|49641802 - gi\|49641802\|emb\|CAH01520.1\| KLLA0C10527p [Kluyveromyces lactis] gi\|49641802, gi\|... - gi\|50305419\|ref\|XP_452669.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641802\|emb\|CAH0152...	142.0	[0..50]	[183..265]
gi\|50554203, gi\|... - gi\|50554203\|ref\|XP_504510.1\| YALI0E28512p [Yarrowia lipolytica], gi\|49650379\|emb\|CAG80113.1\| unnamed... gi\|49650379 - gi\|49650379\|emb\|CAG80113.1\| YALI0E28512p [Yarrowia lipolytica]	140.0	[0..44]	[183..481]
gi\|44980100 - gi\|44980100\|gb\|AAS50296.1\| AAL070Cp [Ashbya gossypii ATCC 10895] gi\|44980100, gi\|... - gi\|45184754\|ref\|NP_982472.1\| AAL070Cp [Ashbya gossypii ATCC 10895], gi\|44980100\|gb\|AAS50296.1\| AAL07...	136.0	[0..49]	[183..236]
gi\|119180600, gi... - gi\|90300543\|gb\|EAS30174.1\| hypothetical protein CIMG_08920 [Coccidioides immitis RS], gi\|119180600\|r...	126.0	[0..44]	[188..211]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELRSFSRQP DGILANPRLG REEVLEGEHP QDARLARQSI WLSPSLIAEY IQLFFNFIIG  60
   61 TIGLSLAIKF ILMIRNDVNL KLEHNVREEL DKIATCKSRY FENQCEPHMR VPALEVRCNE 120
  121 WSKCMNKEIV SGSDYQWAKA WARTLAEVIN AFFEAFSIRS FLFILISIIG IIFVTNTSFG 180
  181 SYRVYLNNKD TKSVRHA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.993
Match:	1f05A
Description:	Transaldolase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits