YRC Public Data Repository - Protein Structure Prediction

Protein:	TAD1
Organism:	Saccharomyces cerevisiae
Length:	400 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAD1.

Description	E-value	Query Range	Subject Range
TAD1 - tRNA-specific adenosine deaminase, deaminates adenosine-37 to inosine in tRNA-Ala TAD1_YEAST - tRNA-specific adenosine deaminase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAD1...	0.0	[1..400]	[1..400]
gi\|7798622, gi\|7... - gi\|7798622\|gb\|AAF69765.1\| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes], gi\|7409...	0.0	[8..384]	[305..674]
gi\|15529506, gi\|... - gi\|53127005\|emb\|CAG31002.1\| hypothetical protein [Gallus gallus], gi\|45383650\|ref\|NP_989571.1\| RNA-s...	0.0	[8..389]	[309..683]
gi\|15593024, gi\|... - gi\|15593024\|gb\|AAL02182.1\|AF403113_1 adenosine deaminase [Danio rerio], gi\|15593018\|gb\|AAL02180.1\|AF...	0.0	[8..382]	[296..663]
RED1_MOUSE - Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1 PE=1 SV=1	0.0	[8..397]	[308..705]
RED1_RAT - Double-stranded RNA-specific editase 1 OS=Rattus norvegicus GN=Adarb1 PE=1 SV=1	0.0	[8..397]	[308..705]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSCQGTRPC IVNLLTMPSE DKLGEEISTR VINEYSKLKS ACRPIIRPSG IREWTILAGV  60
   61 AAINRDGGA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKIEILSIAT GVKALPDSEL QRSEGKILHD CHAEILALRG ANTVLLNRIQ NYNPSSGDKF  60
   61 IQHNDEIPAR FNLKENWELA LYISRLPCGD ASMSFLNDNC KNDDFIKIED SDEFQYVDRS 120
  121 VKTILRGRLN FNRRNVVRTK PGRYDSNITL SKSCSDKLLM KQRSSVLNCL NYELFEKPVF 180
  181 LKYIVIPNLE DETKHHLEQS FHTRLPNLDN EIKFLNCLKP FYDDKLDEED VPGLMCSVKL 240
  241 FMDDFSTEEA ILNGVRNGFY TKSSKPLRKH CQSQVSRFAQ WELFKKIRPE YEGISYLEFK 300
  301 SRQKKRSQLI IAIKNILSPD GWIPTRTDDV K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.677781
Match:	PF02137
Description:	Adenosine-deaminase (editase) domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits