| Protein: | SHE10 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 577 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHE10.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..523] | [1..523] |
|
Region A: Residues: [1-577] |
1 11 21 31 41 51
| | | | | |
1 MGKLIKLITT LTVLVSLLQY CCEFNSGSIS CERTQTLCHY TNPRVWNTYF SRNCELYKNK 60
61 VSPGFDIVAR KYDTAVKPVI DDATVKVNKV AIQPAFKVIH SQCKKWNCGK YYQLVRSPMV 120
121 KTRRFFFAKY NAFVKPNLDK FFTAEFRSHL KERILKYKNI GHYYFTITSR CIKSKYDFIV 180
181 GNTEEKLMGK FKNKDTHGIH GSVTREPSSE DMVLTVSTME SDEEELTTTS TQTVVETITL 240
241 DQEEASAVAN HAHDDEASTD VEGSTDVNVN EQALLQEDFD MWSETILQKT QDVIQLFEKD 300
301 VSKYINGKLV EEANHFKAKF QSLDDKSKKF FSKISLAIND IECVEGIDSE TGKKIFFDKS 360
361 GSTEISQYIT RELVREYFNE TRSTLDELTN AMEKDLSEIT DEIEKKVNAI REENVEVFEE 420
421 WGDIIVNEWS KRMAYVDVIN AHMGADDDTT LDEEKAKSSV NWKKFLKGKK QIIESRDKLA 480
481 HHSADLSRVN AFRQKVQKKI LSFTQESGEF LYILRSKANL QFQERERKER ERKEREKAAA 540
541 EEFQRQQELL RQQEEEDEED VSYTSTSTIT TTITMTL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [130-577] |
1 11 21 31 41 51
| | | | | |
1 YNAFVKPNLD KFFTAEFRSH LKERILKYKN IGHYYFTITS RCIKSKYDFI VGNTEEKLMG 60
61 KFKNKDTHGI HGSVTREPSS EDMVLTVSTM ESDEEELTTT STQTVVETIT LDQEEASAVA 120
121 NHAHDDEAST DVEGSTDVNV NEQALLQEDF DMWSETILQK TQDVIQLFEK DVSKYINGKL 180
181 VEEANHFKAK FQSLDDKSKK FFSKISLAIN DIECVEGIDS ETGKKIFFDK SGSTEISQYI 240
241 TRELVREYFN ETRSTLDELT NAMEKDLSEI TDEIEKKVNA IREENVEVFE EWGDIIVNEW 300
301 SKRMAYVDVI NAHMGADDDT TLDEEKAKSS VNWKKFLKGK KQIIESRDKL AHHSADLSRV 360
361 NAFRQKVQKK ILSFTQESGE FLYILRSKAN LQFQERERKE RERKEREKAA AEEFQRQQEL 420
421 LRQQEEEDEE DVSYTSTSTI TTTITMTL
|
| Detection Method: | |
| Confidence: | 1.37 |
| Match: | 1ciiA |
| Description: | COLICIN IA |
Matching Structure (courtesy of the PDB): |
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