YRC Public Data Repository - Protein Structure Prediction

Protein:	FRA2
Organism:	Saccharomyces cerevisiae
Length:	120 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRA2.

Description	E-value	Query Range	Subject Range
gi\|190407153 - gi\|190407153\|gb\|EDV10420.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] FRA2 - Protein involved in negative regulation of transcription of iron regulon; forms an iron independent ... FRA2_YEAST - Fe repressor of activation 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRA2 PE=1 S...	5.0E-42	[1..120]	[1..120]
gi\|107100314 - gi\|107100314\|ref\|ZP_01364232.1\| hypothetical protein PaerPA_01001339 [Pseudomonas aeruginosa PACS2] gi\|218773404, gi... - gi\|218893176\|ref\|YP_002442045.1\| morphogene protein BolA [Pseudomonas aeruginosa LESB58], gi\|2187734... gi\|194550194, gi... - gi\|84316626\|ref\|ZP_00965098.1\| COG0271: Stress-induced morphogen (activity unknown) [Pseudomonas aer... gi\|15596054, gi\|... - gi\|9946754\|gb\|AAG04246.1\|AE004520_9 morphogene protein BolA [Pseudomonas aeruginosa PAO1], gi\|155960... gi\|254245143, gi... - gi\|84322665\|ref\|ZP_00970749.1\| COG0271: Stress-induced morphogen (activity unknown) [Pseudomonas aer... gi\|11350617 - pir\|\|C83539 morphogene protein BolA PA0857 [imported] - Pseudomonas aeruginosa (strain PAO1)	2.0E-22	[43..120]	[3..86]
gi\|5139535 - gi\|5139535\|emb\|CAB45536.1\| BolA protein [Pseudomonas fluorescens]	2.0E-21	[43..118]	[3..84]
BOLA1 - bolA homolog 1 (E. coli)	4.0E-21	[37..117]	[30..116]
gi\|209743876, gi... - pir\|\|BVECBA bolA protein - Escherichia coli (strain K-12), gi\|41070\|emb\|CAA35633.1\| unnamed protein... gi\|81244334, gi\|... - gi\|82542923\|ref\|YP_406870.1\| possible regulator of murein genes [Shigella boydii Sb227], gi\|81244334... gi\|24050609, gi\|... - gi\|24111818\|ref\|NP_706328.1\| possible regulator of murein genes [Shigella flexneri 2a str. 301], gi\|... gi\|26246443, gi\|... - gi\|26246443\|ref\|NP_752482.1\| BolA protein [Escherichia coli CFT073], gi\|26106841\|gb\|AAN79026.1\|AE016... gi\|73854487, gi\|... - gi\|74311010\|ref\|YP_309429.1\| possible regulator of murein genes [Shigella sonnei Ss046], gi\|73854487... gi\|30061937, gi\|... - gi\|30061937\|ref\|NP_836108.1\| possible regulator of murein genes [Shigella flexneri 2a str. 2457T], g... gi\|82775659, gi\|... - gi\|82775659\|ref\|YP_402006.1\| possible regulator of murein genes [Shigella dysenteriae Sd197], gi\|812... gi\|49176023, gi\|... - gi\|49176023\|ref\|NP_414969.3\| possible regulator of murein genes [Escherichia coli K12], gb\|AAC73538.... gi\|15800165, gi\|... - gi\|15800165\|ref\|NP_286177.1\| possible regulator of murein genes [Escherichia coli O157:H7 EDL933], g... gi\|226898781, gi... - gi\|237707571\|ref\|ZP_04538052.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7 str. Sakai] gi\|91071080, gi\|... - gi\|91209506\|ref\|YP_539492.1\| BolA transcriptional regulator [Escherichia coli UTI89], gi\|91071080\|gb... gi\|115511819, gi... - gi\|117622695\|ref\|YP_851608.1\| regulator of penicillin binding proteins and beta lactamase transcript... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7]	6.0E-21	[30..115]	[7..96]
gi\|91191516, gi\|... - gi\|91223430\|ref\|ZP_01258695.1\| cell division protein BolA [Vibrio alginolyticus 12G01], gi\|91191516\|... gi\|75856125, gi\|... - gi\|75856125\|ref\|ZP_00763759.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio sp. Ex25... BOLA_VIBAL - DNA-binding transcriptional regulator BolA OS=Vibrio alginolyticus GN=bolA PE=3 SV=1	3.0E-20	[38..117]	[1..86]
gi\|17429977 - gi\|17429977\|emb\|CAD16661.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17547673 - gi\|17547673\|ref\|NP_521075.1\| hypothetical protein RSc2954 [Ralstonia solanacearum GMI1000]	4.0E-20	[36..116]	[1..77]
gi\|16504373, gi\|... - gi\|25300382\|pir\|\|AC0904 conserved hypothetical protein STY3487 [imported] - Salmonella enterica subs... gi\|62181816, gi\|... - gi\|62181816\|ref\|YP_218233.1\| BolA family transcriptional regulator [Salmonella enterica subsp. enter... gi\|16762070 - gi\|16762070\|ref\|NP_457687.1\| hypothetical protein STY3487 [Salmonella enterica subsp. enterica serov... gi\|56129494, gi\|... - gi\|56415237\|ref\|YP_152312.1\| hypothetical protein SPA3175 [Salmonella enterica subsp. enterica serov... gi\|16766603, gi\|... - gi\|16766603\|ref\|NP_462218.1\| putative transcriptional regulator [Salmonella typhimurium LT2], gi\|164... gi\|29143559, gi\|... - gi\|29143559\|ref\|NP_806901.1\| hypothetical protein t3225 [Salmonella enterica subsp. enterica serovar... gi\|224585105, gi... - gi\|224585105\|ref\|YP_002638904.1\| hypothetical protein SPC_3378 [Salmonella enterica subsp. enterica ... gi\|214000944 - gi\|214000944\|ref\|ZP_03411679.1\| hypothetical protein Salmonellentericaenterica_10416 [Salmonella ent... gi\|213053030 - gi\|213053030\|ref\|ZP_03345908.1\| hypothetical protein Salmoneentericaenterica_09003 [Salmonella enter... gi\|213028329 - gi\|213028329\|ref\|ZP_03342776.1\| hypothetical protein Salmonelentericaenterica_40940 [Salmonella ente... gi\|207858556, gi... - gi\|207858556\|ref\|YP_002245207.1\| hypothetical protein SEN3141 [Salmonella enterica subsp. enterica s... gi\|205354209, gi... - gi\|205354209\|ref\|YP_002228010.1\| hypothetical protein SG3198 [Salmonella enterica subsp. enterica se... gi\|213973643 - gi\|213973643\|ref\|ZP_03400902.1\| hypothetical protein Salmonellaentericaenterica_02861 [Salmonella en... gi\|213857283 - gi\|213857283\|ref\|ZP_03384254.1\| hypothetical protein SentesT_19080 [Salmonella enterica subsp. enter... gi\|213646985 - gi\|213646985\|ref\|ZP_03377038.1\| hypothetical protein SentesTy_06556 [Salmonella enterica subsp. ente... gi\|213426649 - gi\|213426649\|ref\|ZP_03359399.1\| hypothetical protein SentesTyphi_14168 [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=yrbA] [protein=putative transcriptional regulator] [protein_id=YP_005239487.1] [location=compl... gi\|197364167, gi... - gi\|197364167\|ref\|YP_002143804.1\| hypothetical protein SSPA2963 [Salmonella enterica subsp. enterica ...	9.0E-20	[33..117]	[5..90]
gi\|254849424, gi... - gi\|75830031\|ref\|ZP_00759317.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... BOLA_VIBCH - DNA-binding transcriptional regulator BolA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El To... gi\|146316430, gi... - gi\|75827583\|ref\|ZP_00757018.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|121726775, gi... - gi\|75815769\|ref\|ZP_00746262.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|227010308, gi... - gi\|227082420\|ref\|YP_002810971.1\| bolA protein [Vibrio cholerae M66-2], gi\|227010308\|gb\|ACP06520.1\| b... gi\|121549568, gi... - gi\|121586156\|ref\|ZP_01675947.1\| bolA protein [Vibrio cholerae 2740-80], gi\|121549568\|gb\|EAX59592.1\| ... gi\|124119746, gi... - gi\|153221399\|ref\|ZP_01952377.1\| bolA protein [Vibrio cholerae MAK 757], gi\|124119746\|gb\|EAY38489.1\| ... BOLA_VIBCH - Protein BolA OS=Vibrio cholerae GN=bolA PE=3 SV=1 gi\|153817860, gi... - gi\|153817860\|ref\|ZP_01970527.1\| bolA protein [Vibrio cholerae NCTC 8457], gi\|126511568\|gb\|EAZ74162.1... gi\|126520974, gi... - gi\|153821481\|ref\|ZP_01974148.1\| bolA protein [Vibrio cholerae B33], gi\|126520974\|gb\|EAZ78197.1\| bolA...	9.0E-20	[38..118]	[1..87]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGERIEKVK INDEFAKSHF LTTQWRETKR QRHYKMPVTE QGLRERIESA IPQVYHIIVT  60
   61 DLSYGCGQSF DIVVVSDFFQ GKSKLMRSRA VNKAVKEELQ EIHAFSCKCY TEEEWSKIVV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.744727
Match:	PF01722
Description:	BolA-like protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits