YRC Public Data Repository - Protein Structure Prediction

Protein:	CLG1
Organism:	Saccharomyces cerevisiae
Length:	452 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLG1.

Description	E-value	Query Range	Subject Range
mug80 - cyclin Clg1 MUG80_SCHPO - Meiotically up-regulated gene 80 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m...	239.0	[0..95]	[262..192]
gi\|49526866, gi\|... - gi\|50290249\|ref\|XP_447556.1\| hypothetical protein CAGL0I07051g [Candida glabrata CBS138], gi\|4952686... gi\|49526866 - gi\|49526866\|emb\|CAG60493.1\| unnamed protein product [Candida glabrata]	206.0	[0..38]	[452..14]
gi\|9624459 - gi\|9624459\|gb\|AAF90185.1\|AF280093_1 CLG1 cyclin-like protein [Ajellomyces capsulatus]	187.0	[0..100]	[242..167]
gi\|44984109 - gi\|44984109\|gb\|AAS53119.1\| AER440Cp [Ashbya gossypii ATCC 10895] gi\|44984109, gi\|... - gi\|45191041\|ref\|NP_985295.1\| AER440Cp [Ashbya gossypii ATCC 10895], gi\|44984109\|gb\|AAS53119.1\| AER44...	171.0	[0..4]	[406..3]
gi\|49640202 - gi\|49640202\|emb\|CAH02659.1\| KLLA0A01628p [Kluyveromyces lactis] gi\|49640202, gi\|... - gi\|50302275\|ref\|XP_451071.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640202\|emb\|CAH0265...	150.0	[0..63]	[398..72]
gi\|169770473 - gi\|169770473\|ref\|XP_001819706.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767565 - gi\|83767565\|dbj\|BAE57704.1\| unnamed protein product [Aspergillus oryzae]	124.0	[0..109]	[379..1]
gi\|32414199, gi\|... - gi\|32414199\|ref\|XP_327579.1\| hypothetical protein [Neurospora crassa], gi\|28923744\|gb\|EAA32911.1\| co... gi\|85068263 - gi\|85068263\|ref\|XP_962147.1\| hypothetical protein NCU07293 [Neurospora crassa OR74A]	119.0	[0..125]	[425..3]
gi\|115396132, gi... - gi\|115396132\|ref\|XP_001213705.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	117.0	[0..86]	[424..102]
gi\|111069185 - gi\|111069185\|gb\|EAT90305.1\| hypothetical protein SNOG_02093 [Phaeosphaeria nodorum SN15]	115.0	[0..86]	[263..97]
gi\|46108618, gi\|... - gi\|46108618\|ref\|XP_381367.1\| hypothetical protein FG01191.1 [Gibberella zeae PH-1], gi\|42545814\|gb\|E...	115.0	[0..125]	[426..3]

Back

Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTFKYYPE TMGNSSGYPI SLPFPKGSAT SAVNVARQLP KYLGHVPSQS VHTQLPSMAS  60
   61 LGYFNQPSST YYAPPAPLQQ HQQPPILPPP GLMYTSNNNS NVIPPPVQMI RDGQQQPQQS 120
  121 NQVNGGVSEN LDYDISIMSK FIMENAFVA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [150-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNANYSTDDQ TTDLFFKGIS SVLNATRLPS ATIFLAIDYL FKYINKLSNG IHSIGGNSIN  60
   61 IIYQNTMIAF ILANKFNDDK TFTNNSWSQA TGILINVIND FERQWLRIFN WELYDSAFLY 120
  121 FEFVKNFEIF KQNQLKPAVA VPTLLSPIVN VGDTRNVNFN LKPTSTNNLL SPVSNYETPM 180
  181 LMPHNMFSSP SYQSNSRSEF SSMNGYYNYY NYNQPRLNYY QQFPNIYSSP ISETQFDYDF 240
  241 YNFSSQQQQQ QQKQHSLLPA APQLPPPHVH NQSYGHHLGW KSMDDTINHS RFERNYFPYS 300
  301 AVY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.44
Match:	2pk2A
Description:	No description for 2pk2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits