| Protein: | YIP4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 261 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIP4.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-55 | [2..234] | [30..254] |
|
|
6.0E-49 | [7..235] | [56..281] |
|
|
3.0E-47 | [4..233] | [22..231] |
|
|
4.0E-39 | [27..234] | [41..225] |
|
|
2.0E-38 | [18..234] | [59..257] |
|
|
7.0E-35 | [27..234] | [54..247] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MSYGREDTTI EPDFIEPDAP LAASGGVADN IGGTMQNSGS RGTLDETVLQ TLKRDVVEIN 60
61 SRLKQVVYPH FPSFFSPSDD GIGAADNDIS ANCDLWAPLA FIILYSLFVS HARSLFSSLF 120
121 VSSWFILLVM ALHLRLTKPH
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.305 | 0.462 | vesicle-mediated transport | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.487 | 0.013 | vesicle-mediated transport | a.25.1 | Ferritin-like |
| View | Download | 0.492 | 0.012 | membrane | d.6.1 | Prion-like |
| View | Download | 0.376 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.310 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.304 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.294 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.292 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.277 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.266 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.259 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.252 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.245 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.240 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.235 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.230 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.209 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.208 | N/A | N/A | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.207 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
|
Region A: Residues: [141-261] |
1 11 21 31 41 51
| | | | | |
1 QRVSLISYIS ISGYCLFPQV LNALVSQILL PLAYHIGKQN RWIVRVLSLV KLVVMALCLM 60
61 WSVAAVSWVT KSKTIIEIYL WHSVFFGMAG CQLFYNTSYI CIKPNIHGHR IAYLASHGRK 120
121 F
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
