| Protein: | NUP49 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 472 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP49.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-51 | [1..472] | [1..472] |
|
|
4.0E-42 | [2..297] | [23..336] |
|
|
3.0E-41 | [4..436] | [47..545] |
|
|
2.0E-39 | [4..328] | [1341..1680] |
|
Region A: Residues: [1-238] |
1 11 21 31 41 51
| | | | | |
1 MFGLNKASST PAGGLFGQAS GASTGNANTG FSFGGTQTGQ NTGPSTGGLF GAKPAGSTGG 60
61 LGASFGQQQQ QSQTNAFGGS ATTGGGLFGN KPNNTANTGG GLFGANSNSN SGSLFGSNNA 120
121 QTSRGLFGNN NTNNINNSSS GMNNASAGLF GSKPAGGTSL FGNTSTSSAP AQNQGMFGAK 180
181 PAGTSLFGNN AGNTTTGGGL FGSKPTGATS LFGSSNNNNN NNNSNNIMSA SGGLFGNQ
|
| Detection Method: |  |
| Confidence: | 5.0 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [239-390] |
1 11 21 31 41 51
| | | | | |
1 QQQLQQQPQM QCALQNLSQL PITPMTRISE LPPQIRQEIE QLDQYIQKQV QISHHLKADT 60
61 IDHDELIDSI PRDVAYLLKS ESATSQYLKQ DLKKISSFKS LIDEDLLDTQ TFSVLLQQLL 120
121 TPGSKISSND LDKFFQKKIH LYEKKLEDYC RI
|
|
Region B: Residues: [448-472] |
1 11 21 31 41 51
| | | | | |
1 TLFMDIAERI AVLHQKTKTL ASLSI
|
| Detection Method: | |
| Confidence: | 8.31 |
| Match: | 1dn1B |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [391-447] |
1 11 21 31 41 51
| | | | | |
1 LSDIETAVNG IDTDLFGAPN NPNSTAITAD LGSSEAENLL QLKTGLAAIV STVIEEF
|
| Detection Method: | |
| Confidence: | 8.31 |
| Match: | 1dn1B |
| Description: | Syntaxin 1A N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
